PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold04069-snap-gene-0.18-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 21618.4 Da PI: 4.5485 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.5 | 8.7e-26 | 8 | 116 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkky 68 lppGf+F Ptdeelv ++L +k++ +++ ++i+++d++ ++Pw+++ + maker-scaffold04069-snap-gene-0.18-mRNA-1 8 LPPGFHFCPTDEELVLHFLLRKASLLPCHP-DIIPDLDLCLHDPWEFN-GI----------------- 56 79*************************999.99**************7.22................. PP NAM 69 atgkrknratksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +n +tk+gyW + g d++++++ g++vg+kk Lvfy g+ap g++tdW+m+ey+l maker-scaffold04069-snap-gene-0.18-mRNA-1 57 -NKVTENWITKNGYWMELGIiDEPIVTSAGNKVGIKKYLVFYIGEAPGGVETDWIMQEYHL 116 .2234577999********8799************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-36 | 5 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.952 | 8 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-16 | 9 | 116 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MGDGSVNLPP GFHFCPTDEE LVLHFLLRKA SLLPCHPDII PDLDLCLHDP WEFNGINKVT 60 ENWITKNGYW MELGIIDEPI VTSAGNKVGI KKYLVFYIGE APGGVETDWI MQEYHLCNHD 120 LRGALHNRRG KRKIDCSKWV LCRVYERKGN FAQWLCNSDD EDNGTELSSP DEMFLSAIDD 180 EFDDTSFPK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-28 | 5 | 150 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-28 | 5 | 150 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023914281.1 | 1e-133 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 4e-51 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2N9J5M8 | 1e-101 | A0A2N9J5M8_FAGSY; Uncharacterized protein | ||||
STRING | VIT_04s0044g01500.t01 | 4e-69 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-53 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|