PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03906-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 579aa    MW: 64401.8 Da    PI: 6.214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03906-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.65.6e-10423957830373
                                           GRAS  30 laspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                                                     +s++gdp++R+  yf eAL +rl+    +  k+l++ +t+   +++ +  +k++++++P+ kf
  maker-scaffold03906-augustus-gene-0.14-mRNA-1 239 SVSEHGDPIERVGYYFSEALYSRLSV---QAEKSLTMVQTT---TEDFTLTYKALNDACPYSKF 296
                                                    6899*********************9...777888888887...7899999************* PP

                                           GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..s 154
                                                    +hltaNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g   
  maker-scaffold03906-augustus-gene-0.14-mRNA-1 297 AHLTANQAILEATATATKIHIVDFGIVQGVQWAALLQALATRSNGKPtMIRISGIPAPALGtsP 360
                                                    *******************************************887779*********999999 PP

                                           GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                                                    + +l +tg+rL++fA+ l+++fef++ v + +++l+ +++rv+p+E+laVn++lql++llde  
  maker-scaffold03906-augustus-gene-0.14-mRNA-1 361 AASLFATGNRLREFANILKLNFEFEP-VLTPIQELNESSFRVEPDEVLAVNFMLQLYNLLDEAP 423
                                                    99************************.799******************************8877 PP

                                           GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                                                       +   + L+l ksl+Pk+v++ e e+++n+  F++r  +al+yysa+f+sle +l r+s er
  maker-scaffold03906-augustus-gene-0.14-mRNA-1 424 VAVE---TALRLAKSLNPKIVTLGEYEVSLNRVGFFNRCKNALRYYSAVFESLEPNLTRDSPER 484
                                                    6666...9******************************************************** PP

                                           GRAS 283 ikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                                                    i vEr llgr+i  v+  e+ e +rer+e +e+W+  +e++GF+pv+ls++a++qa+ ll +++
  maker-scaffold03906-augustus-gene-0.14-mRNA-1 485 IQVERLLLGRRIAGVIGPEEPEtKRERMEDKEQWKVLMESSGFEPVALSHYAVSQARILLWNYN 548
                                                    ******************999989**************************************** PP

                                           GRAS 346 .sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                                                     s  y++ e+   ++ l W++ pL+ vS+W
  maker-scaffold03906-augustus-gene-0.14-mRNA-1 549 ySSSYSLIESPPGFLsLAWNEVPLLNVSSW 578
                                                    9999*99888766666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.078179557IPR005202Transcription factor GRAS
PfamPF035141.9E-101239578IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MRSRFPKRSK GDDVSETAIS TRRRPTCHGL RFWGVGSTTY VKVPEQSGRE KVVHVDVYDL  60
VLSFRAIRSH FRMGATSWMS NKEQRLSPLR FQKERKLCKK RPAFSDPFQV AGGPDAGEPG  120
FPFPNLDQDQ TGFRFPDFGG GGGGEFDSDE WMDSLMGGGD STDSSNLPSG CDAWQNNADF  180
GIYGADPFTT CPSRLSGRCS PPSDLNRVIF PDSQKSPSLP QVPSWTPPPP PQPQQPPKSV  240
SEHGDPIERV GYYFSEALYS RLSVQAEKSL TMVQTTTEDF TLTYKALNDA CPYSKFAHLT  300
ANQAILEATA TATKIHIVDF GIVQGVQWAA LLQALATRSN GKPTMIRISG IPAPALGTSP  360
AASLFATGNR LREFANILKL NFEFEPVLTP IQELNESSFR VEPDEVLAVN FMLQLYNLLD  420
EAPVAVETAL RLAKSLNPKI VTLGEYEVSL NRVGFFNRCK NALRYYSAVF ESLEPNLTRD  480
SPERIQVERL LLGRRIAGVI GPEEPETKRE RMEDKEQWKV LMESSGFEPV ALSHYAVSQA  540
RILLWNYNYS SSYSLIESPP GFLSLAWNEV PLLNVSSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-14323957832374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075848.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2N9EP260.0A0A2N9EP26_FAGSY; Uncharacterized protein
STRINGcassava4.1_003937m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.11e-177GRAS family protein