PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03547-augustus-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 149aa MW: 17093.6 Da PI: 10.357 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.4 | 6.7e-41 | 15 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lp G+rF+Ptdeelvv+yLk+kv + ++++ +vi+e+d+++++Pw Lp + +++ yfFs+r maker-scaffold03547-augustus-gene-0.16-mRNA-1 15 LPIGYRFRPTDEELVVHYLKRKVFSIPFPA-SVIPEFDVFQTDPWGLPGDL---NEKRYFFSSR 74 699***************************.99***************544...4678****98 PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ ++++++ra+ sgyWk gkdk++l++ ++++vg++k L+f +g+++ g+kt+Wvmheyr maker-scaffold03547-augustus-gene-0.16-mRNA-1 75 KSV--NENKSKRAAGSGYWKPIGKDKQILASgSNQAVGMRKALMFCEGKRSYGTKTRWVMHEYR 136 776..567999******************9966778***************************9 PP NAM 128 l 128 l maker-scaffold03547-augustus-gene-0.16-mRNA-1 137 L 137 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-45 | 9 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.299 | 15 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-25 | 16 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDQRPNFVIQ GGFKLPIGYR FRPTDEELVV HYLKRKVFSI PFPASVIPEF DVFQTDPWGL 60 PGDLNEKRYF FSSRKSVNEN KSKRAAGSGY WKPIGKDKQI LASGSNQAVG MRKALMFCEG 120 KRSYGTKTRW VMHEYRLVGS ETNAYSTQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-33 | 13 | 149 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-33 | 13 | 149 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-33 | 13 | 149 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-33 | 13 | 149 | 15 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
3swm_B | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
3swm_C | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
3swm_D | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
3swp_A | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
3swp_B | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
3swp_C | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
3swp_D | 1e-33 | 13 | 149 | 18 | 157 | NAC domain-containing protein 19 |
4dul_A | 1e-33 | 13 | 149 | 15 | 154 | NAC domain-containing protein 19 |
4dul_B | 1e-33 | 13 | 149 | 15 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023884758.1 | 1e-105 | NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 7e-52 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A2N9HGT7 | 3e-87 | A0A2N9HGT7_FAGSY; Uncharacterized protein | ||||
STRING | EOY02882 | 2e-70 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-54 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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