PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold03538-augustus-gene-0.18-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27281.6 Da PI: 6.5062 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEdell v+++G ++W++Iar g++R++k+c+ rw++yl maker-scaffold03538-augustus-gene-0.18-mRNA-1 14 KGAWQEEEDELLSTFVTLMGERRWDSIARASGLKRSGKSCRFRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 73 | 112 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eE+++++++++++G++ W++Iar+++ gRt++++k++w+++l maker-scaffold03538-augustus-gene-0.18-mRNA-1 73 EEEQIILRLHELWGNK-WSRIARRLP-GRTDNEIKNYWRTHL 112 9***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.823 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-26 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.94E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.994 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-14 | 71 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.54E-11 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MAFKAAMQGE KLRKGAWQEE EDELLSTFVT LMGERRWDSI ARASGLKRSG KSCRFRWLNY 60 LHPNLKHGHI SIEEEQIILR LHELWGNKWS RIARRLPGRT DNEIKNYWRT HLRKKAQARH 120 EGNFYCELKN GEQDFFFQKG DMSGLNHNYK NHGTAEDFCG TSDDSFDALG SSNFALISSP 180 CETQLSDPIL ELIKDQSEIK HHEGCNSLES CFCYPALIPD DSNIWDYAGF LWNMD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-22 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-22 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-22 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-22 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-22 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023911310.1 | 1e-161 | transcription factor MYB27-like | ||||
Swissprot | Q9SCP1 | 1e-59 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A2N9F1X0 | 1e-145 | A0A2N9F1X0_FAGSY; Uncharacterized protein | ||||
STRING | EOY07961 | 8e-94 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53200.1 | 4e-62 | myb domain protein 27 |
Publications ? help Back to Top | |||
---|---|---|---|
|