PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03136-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 515aa    MW: 57842.6 Da    PI: 4.458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03136-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.81e-34801722103
                                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SS CS
                               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdee 69 
                                                Fl+k++e+++d+ l+ +isws++g+sfvv+d+ e+++ vLp+ Fkh+nf+SFvRQLn+YgF+k+++++
  maker-scaffold03136-snap-gene-0.30-mRNA-1  80 FLTKTFELVDDPVLDPIISWSSSGESFVVWDPVELSRVVLPRNFKHNNFSSFVRQLNTYGFRKIDTDR 147
                                                9****************************************************************999 PP

                                                BTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                               HSF_DNA-bind  70 kkskskekiweFkhksFkkgkkellekikrkkse 103
                                                         weF+++ F++gk++ll++i+r+ks+
  maker-scaffold03136-snap-gene-0.30-mRNA-1 148 ---------WEFANEAFRRGKRHLLKNIQRRKSH 172
                                                .........**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-5676169IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3576169IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3677169IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-1880103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3080169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-18118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340119143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-18131143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEPKDEPPKT TTSSIQPETS SSSFSTASVS NIDDSLMGFE FMAGKAPRTT VQSSSGGEAE  60
NNISVPQPIG WLQEIPIPPF LTKTFELVDD PVLDPIISWS SSGESFVVWD PVELSRVVLP  120
RNFKHNNFSS FVRQLNTYGF RKIDTDRWEF ANEAFRRGKR HLLKNIQRRK SHQSQQIGIY  180
TGPSTEAGRS GLDSEIERLK MERSTMMQEV VELQQQHRGT MHHMEAVNER LQSAEQRQKQ  240
MVSFLAKMLQ NPAFLDLLKQ KKEQREIDSP RVRRKFVKQH QHEIGKSDSS MDGQIVNYQP  300
DWGLPFVPSL GLDLNPPVEH SQDFLSPVMD TTLEAMGLGA ESIPFQFENV ESVELALSDE  360
LAVLQGFAKT PGQMGEGSSR FRTEDPKGKN VINPPEEVNT EYLVSYPEEI IEEKAFSQLS  420
PGIESPIKQE EIWSMGFDAS TVMPSSSSEL WDTPINYEVP ELEVTGGLSD IWDLGSLQVA  480
GGLGIDKWTA DESSFGEPES QDDQPKDDIS KNRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-247716926129Heat shock factor protein 1
5d5v_B4e-247716926129Heat shock factor protein 1
5d5v_D4e-247716926129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839503.10.0PREDICTED: heat stress transcription factor A-2e-like
TrEMBLA0A2N9HNM50.0A0A2N9HNM5_FAGSY; Uncharacterized protein
STRINGEMJ040670.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-97heat shock transcription factor A3