PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02679-augustus-gene-0.25-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SBP | ||||||||
Protein Properties | Length: 193aa MW: 21864.5 Da PI: 9.747 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.5 | 6.7e-42 | 68 | 145 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 +Cq+e+C+adls+ak yhrrhkvCe h+ka+ vlv g++qrfCqqCsrfhelsefDe+krsCrr maker-scaffold02679-augustus-gene-0.25-mRNA-1 68 CCQAEKCTADLSDAKPYHRRHKVCENHAKAQDVLVGGIRQRFCQQCSRFHELSEFDETKRSCRR 131 6*************************************************************** PP TTT-------S--- CS SBP 65 rLakhnerrrkkqa 78 rLa+hnerrrk++a maker-scaffold02679-augustus-gene-0.25-mRNA-1 132 RLAGHNERRRKNSA 145 ***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-33 | 63 | 130 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.958 | 66 | 143 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.57E-38 | 67 | 147 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-32 | 69 | 142 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSLGKVDGNY QRMEKQQKAV KKEVMMESSD EELESLEEEK RQKGVVGSVG FGNNGKKGGS 60 TTGNGMRCCQ AEKCTADLSD AKPYHRRHKV CENHAKAQDV LVGGIRQRFC QQCSRFHELS 120 EFDETKRSCR RRLAGHNERR RKNSAESHAE GSSRKGIGGN HQLKDLVCGQ VDDRGRIKIT 180 IHENSTYKHF QIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-39 | 59 | 142 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY921636 | 1e-114 | AY921636.1 Betula platyphylla squamosa promoter binding-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023889584.1 | 1e-115 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q9S7A9 | 2e-48 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A2N9GHB3 | 2e-92 | A0A2N9GHB3_FAGSY; Uncharacterized protein | ||||
STRING | VIT_12s0028g03350.t01 | 9e-75 | (Vitis vinifera) | ||||
STRING | EOX99466 | 3e-74 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 1e-48 | squamosa promoter binding protein-like 4 |