PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02578-augustus-gene-0.27-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HD-ZIP

Protein Properties

Length: 278aa MW: 31722.4 Da PI: 6.0043

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02578-augustus-gene-0.27-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.2e-18	54	106	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ eq+++Le+ Fe ++++ e++ +LA++l+L+ rqV +WFqNrRa++k maker-scaffold02578-augustus-gene-0.27-mRNA-1 54 KRRLSLEQVKALERSFEVENKLEPERKVKLAAELSLQPRQVAIWFQNRRARWK 106 557999**********************************************9 PP
2	HD-ZIP_I/II	130	9.6e-42	53	144	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65 kkrrls eqvk+LE+sFe e+kLeperKv+la eL lqprqva+WFqnrRAR+ktkqlE dy + maker-scaffold02578-augustus-gene-0.27-mRNA-1 53 KKRRLSLEQVKALERSFEVENKLEPERKVKLAAELSLQPRQVAIWFQNRRARWKTKQLEGDYGV 116 9************************************************************* PP HD-ZIP_I/II 66 LkraydalkeenerLekeveeLreelke 93 Lk++ydalk + ++Le+e+++L+++lk+ maker-scaffold02578-augustus-gene-0.27-mRNA-1 117 LKASYDALKLDYHNLEQENKALTSKLKD 144 **********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-18	48	110	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-17	51	112	IPR001356	Homeobox domain
CDD	cd00086	6.28E-16	53	109	No hit	No description
PROSITE profile	PS50071	16.52	53	108	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	54	106	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-19	55	114	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.5E-15	108	149	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MKRFSSSDSL AALISISPPK ENNTYCYSED FHAMLDRLEH EDMEEETGLV MGKKRRLSLE 60 QVKALERSFE VENKLEPERK VKLAAELSLQ PRQVAIWFQN RRARWKTKQL EGDYGVLKAS 120 YDALKLDYHN LEQENKALTS KLKDLKSKLC RASSESNHSV NEQSPISEFD NNVSEQSKGN 180 DLRAENSNKA GSVDSDSNGI MKEESKMKFS LSFNGSSSYT NPLVNRLQFS DPRTVVPAKG 240 HQPQIVKMEE QSLFSTEDSC NFFAVDQAPT LHWYLPEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	108	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023872404.1	0.0	homeobox-leucine zipper protein ATHB-6-like
Refseq	XP_023872405.1	0.0	homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A2N9IZT9	1e-123	A0A2N9IZT9_FAGSY; Uncharacterized protein
STRING	EMJ26949	1e-107	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1868	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	5e-44	homeobox protein 16