PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02511-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 365aa    MW: 40549.2 Da    PI: 8.5829
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02511-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.1e-41216293178
                                                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS
                                            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 
                                                    +Cq+egC+adl++ak+yhrrhkvCe+hska++vl++gl+qrfCqqCsrfh lsefD++krsCr+
  maker-scaffold02511-augustus-gene-0.11-mRNA-1 216 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVLAAGLTQRFCQQCSRFHLLSEFDNGKRSCRK 279
                                                    6*************************************************************** PP

                                                    TTT-------S--- CS
                                            SBP  65 rLakhnerrrkkqa 78 
                                                    rLa+hn+rrrk+q+
  maker-scaffold02511-augustus-gene-0.11-mRNA-1 280 RLADHNRRRRKTQQ 293
                                                    ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-35210278IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.351214291IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-38215294IPR004333Transcription factor, SBP-box
PfamPF031101.2E-30217290IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
EEEESFDFDP TSSLPFGQKK KCWTTNGATP STMMLTGEEE PGPDSDHTRQ IFDHYTQQQH  60
HHQQQQPFHD HTGFNLHHHQ HHHQTTATNT GFSHAHANFN PHQTQTQTQT HSQFHSLYDP  120
RAYSSASAAA AYNQQAPQLL SLDPLPGAAV GSGAAGYLVV PKSEDASSRP PVDFVSRIGL  180
NLGGRTYFSS AEDEFVNRLY RRARPANEPG SGNSPRCQAE GCNADLTHAK HYHRRHKVCE  240
FHSKASTVLA AGLTQRFCQQ CSRFHLLSEF DNGKRSCRKR LADHNRRRRK TQQPNQENQK  300
SQPDNARNSS MGNLTRSPPD SGAPSSSSVT VAVSPPRMSL DCFRQRPYQA TASSASSSSL  360
FFSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30209290384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923672.10.0squamosa promoter-binding-like protein 8
RefseqXP_023923677.10.0squamosa promoter-binding-like protein 8
SwissprotQ8GXL39e-78SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A2I6SES71e-146A0A2I6SES7_9ROSI; SBP-box transcription factor
STRINGcassava4.1_023056m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-72squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]