PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02240-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 538aa    MW: 59899.8 Da    PI: 6.0424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02240-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.4e-1616911799
                                               E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                                         B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                                                lp kfa++   ++   +++  led+sg++W+v++  +  +g+  +++GW++F  ++gL+ gDf+vF ++
  maker-scaffold02240-snap-gene-0.30-mRNA-1 16 FLPPKFAATVsALV---NQKTFLEDSSGQQWKVTI--SIVDGSLAFQRGWSSFSLDHGLEIGDFLVFNYM 80
                                               58999*99996555...34699*************..8889999*************************9 PP

                                               SSSEE..EEEEE-S CS
                                         B3 86 grsefelvvkvfrk 99
                                               g s f  vv v++k
  maker-scaffold02240-snap-gene-0.30-mRNA-1 81 G-SHF--VVNVYNK 91
                                               8.788..8888765 PP
2B3352.6e-114725352996
                                                -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                                         B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                                +    k + l+d++ + W v +    +++  +l++GW++F +an++++gD +vF+l++  e+ + v++
  maker-scaffold02240-snap-gene-0.30-mRNA-1 472 VRMDRKVVYLRDSDMKLWPVLY--HERPNLKLLASGWESFSNANKIQAGDECVFSLES--EGIYGVQI 535
                                                44456789**************..999999*************************865..44445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.0E-51092IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-161594IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-131691IPR003340B3 DNA binding domain
CDDcd100171.01E-141790No hitNo description
PROSITE profilePS5086312.1391792IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-151794IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.031440534IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-13444537IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-13446537IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-9471535IPR003340B3 DNA binding domain
CDDcd100171.12E-9476537No hitNo description
PROSITE profilePS5086311.505479538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MNDLCIHFEC VIPLQFLPPK FAATVSALVN QKTFLEDSSG QQWKVTISIV DGSLAFQRGW  60
SSFSLDHGLE IGDFLVFNYM GSHFVVNVYN KTGCEKLLFP ENSRLKKRAR TNCNSTAKPS  120
QWHANDEDSM NKQGSSTSAV SMSGAEISQS QCTMEVPENP SNHEDIIQRP KPMSTAEYCE  180
ETYYMIDRDV GDRQDDRSSM LDLSKFEMKN INSVADVTKK SAAKDVGSST SQMFLTETCL  240
VDKDPVTSGT VSKVGNIDAS EIERSHFSEK LEKKSSLPDK FFCNDSTSGH LFTTSAVMLD  300
KNKEKISDIL NKKCQIAGES GDKVSKSLTL KNQVFLSSKE HALLNDIGSC RSAAQKFIAM  360
SESFGVPNNF ERQNCQTGKE SKVIKEELIQ RADTIVRDND IGLRTVKAEP VDSIGILSPN  420
TASISCLVAT ENNSSLNMVC VILFVSTDYF HLPLTLMQEL STCLPYSSKG RVRMDRKVVY  480
LRDSDMKLWP VLYHERPNLK LLASGWESFS NANKIQAGDE CVFSLESEGI YGVQIVRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110LKKRART
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887918.10.0uncharacterized protein LOC112000043 isoform X3
TrEMBLA0A2N9FJT00.0A0A2N9FJT0_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-11B3 family protein