PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02209-augustus-gene-0.43-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 604aa    MW: 68000.8 Da    PI: 6.7057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02209-augustus-gene-0.43-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS173.41.7e-532914694181
                                           GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67 
                                                    lL++cA+av+s+d++  ++lL+++++++sp gd  qRla+yf++AL+arla++   +y  l+++
  maker-scaffold02209-augustus-gene-0.43-mRNA-1 291 LLTQCAQAVASSDQKTSNELLNQIRQHSSPLGDRYQRLAHYFANALEARLAGTRIPIYTPLESN 354
                                                    79**************************************************888999877777 PP

                                           GRAS  68 etseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLl 129
                                                     ts   +++ l+a++ f  v+P+ ++s++ aN++I + +e    +++HiiDf+i +GlQWp+L+
  maker-scaffold02209-augustus-gene-0.43-mRNA-1 355 GTS---VANYLKAYQPFKTVCPFKRMSNFFANRTIRKLAEARkaTTLHIIDFGILYGLQWPCLI 415
                                                    776...9****************************999887755889***************** PP

                                           GRAS 130 qaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                                                    q L+ Rp+gp ++R+Tg++ p++g   +e++eetg+rL++++++++vpfe+n++
  maker-scaffold02209-augustus-gene-0.43-mRNA-1 416 QRLSIRPGGPLKFRVTGIELPQPGfrPAERVEETGRRLENYCKRINVPFEYNAI 469
                                                    ***********************9****************************96 PP
2GRAS59.66.4e-19469550210291
                                           GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                                                    + +++de+++++ +rd vL+l+k+++P+++v+   +  +n++ Fl+rf eal +ysalfd+l+a
  maker-scaffold02209-augustus-gene-0.43-mRNA-1 469 IAHIPDETMAINCPRDIVLNLIKRINPDLFVHGVVNGAYNAPFFLTRFREALFFYSALFDMLDA 532
                                                    57899*********************************************************** PP

                                           GRAS 274 klpreseerikvErellg 291
                                                    ++pre+++r  +E+e +g
  maker-scaffold02209-augustus-gene-0.43-mRNA-1 533 TMPREDHQRLQLEKERIG 550
                                                    *************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.36262604IPR005202Transcription factor GRAS
PfamPF035145.9E-51291469IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDNLLEYNHE FVPDPFLPNN TQHPVDSSPS IGTSLGGEPS YTSDPSALLE YMNEMLMEED  60
LEARPCMLQD GLALQAAEKS FYEVLGQGDH PLTNQDNECP YALVAGNSRT HVSNSYYVAD  120
NLIKSNWSHD QGESNSFCIQ TSLIDSQSEN LLLPDSFSET HSFAQVKGGM GIAVESIRHG  180
NMKSLIWKAS HQCLQSTPGR EDTDNLEEGR SSKHSLVDAG EVDFELLEKL DKILRCPAGD  240
SESASSALHK SGGYGGRKKL QHNNHSKGSH GKTMLPKHEG KKRVVVDFWG LLTQCAQAVA  300
SSDQKTSNEL LNQIRQHSSP LGDRYQRLAH YFANALEARL AGTRIPIYTP LESNGTSVAN  360
YLKAYQPFKT VCPFKRMSNF FANRTIRKLA EARKATTLHI IDFGILYGLQ WPCLIQRLSI  420
RPGGPLKFRV TGIELPQPGF RPAERVEETG RRLENYCKRI NVPFEYNAIA HIPDETMAIN  480
CPRDIVLNLI KRINPDLFVH GVVNGAYNAP FFLTRFREAL FFYSALFDML DATMPREDHQ  540
RLQLEKERIG GCYERNSDEE AVLLAKKAVE SEYHKDFVIY KDGQWMLQGW KGRIIYASSC  600
WKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-3729454925296Protein SCARECROW
5b3h_A4e-3729454924295Protein SCARECROW
5b3h_D4e-3729454924295Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897036.10.0scarecrow-like protein 14
TrEMBLA0A2N9G6870.0A0A2N9G687_FAGSY; Uncharacterized protein
STRINGcassava4.1_002718m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-123GRAS family protein