PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold02114-augustus-gene-0.15-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29262.9 Da PI: 7.052 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W + +++ g++R++k c++rw++yl maker-scaffold02114-augustus-gene-0.15-mRNA-1 14 KGAWTAQEDKILTEYVRIHGEGQWGKLPKRAGLKRCGKGCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ maker-scaffold02114-augustus-gene-0.15-mRNA-1 67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111 7899******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.17 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.26E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.018 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRRPCCSKE GLNKGAWTAQ EDKILTEYVR IHGEGQWGKL PKRAGLKRCG KGCRLRWLNY 60 LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLSRKVHDNK 120 CATPTPSGQS TEDKSKIDLQ VVQTNAINNK NDHFDTKDSW LSVDCDHTFN DKSLEFDMYH 180 GLSSFANGSD NIQSSDFMKD FNMEELCFSD LLISPYLPDS RVFECSNGYD NGLSPSLEKC 240 LIFSNEMLRD WSFIQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB434610 | 4e-49 | AB434610.1 Fagus crenata FcMYBD5 mRNA for transcription factor MYBD5, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023890966.1 | 1e-171 | transcription factor MYB8-like | ||||
TrEMBL | A0A2N9ING0 | 1e-119 | A0A2N9ING0_FAGSY; Uncharacterized protein | ||||
STRING | EOY30297 | 7e-85 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-62 | myb domain protein 4 |