PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01859-snap-gene-0.28-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GATA

Protein Properties

Length: 303aa MW: 32581 Da PI: 4.8182

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01859-snap-gene-0.28-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.8	1.3e-17	266	300	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l maker-scaffold01859-snap-gene-0.28-mRNA-1 266 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 300 99*****************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	5.8E-11	260	303	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.149	260	296	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.19E-12	260	297	No hit	No description
Gene3D	G3DSA:3.30.50.10	6.2E-14	262	297	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.68E-12	265	299	No hit	No description
PROSITE pattern	PS00344	0	266	291	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.8E-15	266	300	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEAPEYQSGF CTQFVTEKRH SIDNKAAAGA GGGGGDHFMV EDLLDFSNDE DAVIADTPFE 60 EAATTTTAGN STDSSTVTIV DSCNSSSFSG CDPNFMSDIG CRNFPDANFS SDLCVPYDDL 120 AELEWLSNFV EESFSSEDLQ KLQMISGMKA RTVDETSETT TQHEPSIRNN SNSSPIFRPE 180 MSVPAKARSK RSRAAPCNWT SRLLVLSQQQ STPPPSSPPP PPQHQPSFPP SDPDIAFAKK 240 TLKVAAAYSK KRDGGGVDSG GDGRKCLHCA TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL 300 AIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023918306.1	1e-172	GATA transcription factor 12-like
Swissprot	P69781	2e-61	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A2N9GIS4	1e-140	A0A2N9GIS4_FAGSY; GATA transcription factor
STRING	cassava4.1_010069m	1e-119	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1364	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	2e-42	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]