PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01695-augustus-gene-0.23-mRNA-2

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 300aa MW: 33243 Da PI: 6.2558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01695-augustus-gene-0.23-mRNA-2	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	5.8e-05	40	65	1	26
CHHHHHHHHHHHHHHHHHHHHHHHCT CS HLH 1 rrrahnerErrRRdriNsafeeLrel 26 r++ + rE+ RRdr+N+ f eL maker-scaffold01695-augustus-gene-0.23-mRNA-2 40 RKVQKADREKLRRDRLNEQFLELGNT 65 5677889***************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.6E-4	39	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDQWKTDNNN FTAELAPSTS APSNPRQSVD VEIKDPVAAR KVQKADREKL RRDRLNEQFL 60 ELGNTLGLLC EFIATPLLTC SFLAEHILSF HYIQLTQEKT ELREEKASLK SDIENLNVQY 120 QQRLRVMFPW AAMDPSVVMG PPYSYPVPVP VPSGPIPMHP SLQPFPFFGN HTTGGIANPC 180 STFIPYPTPP NPPVEQPSAQ YASTSQISSK QDSKSKSSDH QRGSNVERCD DSNDVATELE 240 LKMPGSSVQQ DLSSEGRKGK QSQRKERSAT EVSSSSRYSS SQGHQESSSN SVGDMPKSQN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924007.1	1e-151	transcription factor bHLH121-like
Swissprot	Q9LT23	4e-49	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2N9I7D0	1e-148	A0A2N9I7D0_FAGSY; Uncharacterized protein
STRING	XP_008336910.1	1e-131	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	3e-34	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]