PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01684-snap-gene-0.33-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 432aa MW: 48832.5 Da PI: 6.5786 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.4 | 7.1e-50 | 18 | 174 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................... 49 lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp+ maker-scaffold01684-snap-gene-0.33-mRNA-1 18 LPPGFRFHPTDEELITFYLASKVFNGAFCG-VEIAEVDLNRCEPWELPEkrkreeklnvcvfsssllt 84 79*************************777.45**************95589**************** PP NAM 50 ..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106 +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l g+kktL maker-scaffold01684-snap-gene-0.33-mRNA-1 85 cicwfvflidVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsSGALLGMKKTL 152 ****9999986666999*************************************9978889******* PP NAM 107 vfykgrapkgektdWvmheyrl 128 vfykgrap+gekt+Wvmheyrl maker-scaffold01684-snap-gene-0.33-mRNA-1 153 VFYKGRAPRGEKTKWVMHEYRL 174 ********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-18 | 13 | 79 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.542 | 18 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-27 | 19 | 174 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-40 | 92 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MEDVLRELAG EEINERGLPP GFRFHPTDEE LITFYLASKV FNGAFCGVEI AEVDLNRCEP 60 WELPEKRKRE EKLNVCVFSS SLLTCICWFV FLIDVAKMGE REWYFFSLRD RKYPTGLRTN 120 RATGAGYWKA TGKDREVYSA SSGALLGMKK TLVFYKGRAP RGEKTKWVMH EYRLDGDFSY 180 RHTCKEEWVI CRIFHKAGEK KNSLFQGQSY LLEAASSPTS GSLPPLLETP TTTLLECQSQ 240 NSMQDLQNHF LINQQENDLK SLINPVVSQS HLFPINGFQV QPSLSPIPTT ITSSTTVATN 300 KNTDTTNNPS PSPLPSMLFK SLLSHQECTF KEHVTIQKQC KTEGNFSHFQ LPAEANLQWM 360 MDRTLPNTYQ NQNPLLFQID CGLLGLSALA SAPTTDATGH EMSTSIAFNR AGFQLMLDTP 420 MRIHGESWPL DA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-45 | 15 | 199 | 12 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM448148 | 6e-82 | AM448148.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X222766.12, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023877866.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-104 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A2N9EJM8 | 0.0 | A0A2N9EJM8_FAGSY; Uncharacterized protein | ||||
STRING | EOY15912 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7888 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 4e-95 | NAC family protein |
Publications ? help Back to Top | |||
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