PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01634-snap-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SAP | ||||||||
Protein Properties | Length: 420aa MW: 46470.4 Da PI: 6.6702 | ||||||||
Description | SAP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SAP | 586.2 | 9.2e-179 | 1 | 418 | 52 | 454 |
SAP 52 latqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrh 119 la+qvaidas+s+Grlaaa+alanvfqvcstwravsr d lw+rltr iW rt+ll+dtW++e++y+h maker-scaffold01634-snap-gene-0.14-mRNA-1 1 LAAQVAIDASHSIGRLAAAPALANVFQVCSTWRAVSRWDALWHRLTRSIWGRTQLLHDTWHDEFVYWH 68 89****************************************************************** PP SAP 120 rtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstfl 187 rta+nf+t+r+++ tl+fd+ d+ +d ++Crc+++sd++la+GfadGavr+fdl+ + hv t++ maker-scaffold01634-snap-gene-0.14-mRNA-1 69 RTAQNFHTGRSAHGTLAFDDV--DN---QDGYTCRCMTMSDRHLACGFADGAVRVFDLAMHNHVVTLR 131 ******************996..33...47899*********************************** PP SAP 188 pqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGs.. 253 p+++++lG+f+ravsGivi+ ++l+fatldGdihva+i g g + rra+ G+vvndGalvdf+G+ maker-scaffold01634-snap-gene-0.14-mRNA-1 132 PHEGNHLGQFARAVSGIVINGATLAFATLDGDIHVAMIIG-GGGVIRRAHEGNVVNDGALVDFTGCgs 198 **************************************99.5599******************98733 PP SAP 254 grWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvt.........e 312 grWwvGlyaG+p rafhiWd+ teelv+v Gslt+Pe+vmGWh+l + ++vGrvrv + maker-scaffold01634-snap-gene-0.14-mRNA-1 199 GRWWVGLYAGAPNRAFHIWDSVTEELVYVNGSLTNPESVMGWHLLINENQFVGRVRVVttiiseeeeD 266 69******************************************************843344433324 PP SAP 313 retavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasnea.yvvvdsrGvatvrrvenleevcr 379 ++ avaCts+rl+vfdlrn+ v l eee++rG+iv+s+d+sn+a y++vd+rG a+v r +leevcr maker-scaffold01634-snap-gene-0.14-mRNA-1 267 HQLAVACTSSRLIVFDLRNPAVTLFEEESNRGFIVTSVDVSNDArYIRVDNRGDARVCRLGTLEEVCR 334 678*************************************999869********************** PP SAP 380 frvrg........aqrg..vlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrh 437 f++ g +qr+ v+gC+n+gyal++ gg++rvWe+ + + yly++rer+gevna+va++r+ maker-scaffold01634-snap-gene-0.14-mRNA-1 335 FNIYGgggggrsgSQRRvmVMGCMNLGYALMCVGGMIRVWEVLHGG-YLYHFRERIGEVNAVVANERY 401 **95433333445677733579********************9965.********************* PP SAP 438 vavsssdgtihlldfga 454 va++ssd ihl+dfga maker-scaffold01634-snap-gene-0.14-mRNA-1 402 VAAASSDRRIHLWDFGA 418 ****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.1280.50 | 7.8E-6 | 20 | 93 | No hit | No description |
SuperFamily | SSF81383 | 9.16E-7 | 21 | 69 | IPR001810 | F-box domain |
SuperFamily | SSF50978 | 1.61E-17 | 92 | 415 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 3.8E-6 | 96 | 168 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Gene3D | G3DSA:2.130.10.10 | 6.5E-11 | 205 | 416 | IPR015943 | WD40/YVTN repeat-like-containing domain |
PROSITE profile | PS50294 | 9.626 | 369 | 420 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 8.871 | 398 | 420 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 402 | 416 | IPR019775 | WD40 repeat, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0030163 | Biological Process | protein catabolic process | ||||
GO:0046622 | Biological Process | positive regulation of organ growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
LAAQVAIDAS HSIGRLAAAP ALANVFQVCS TWRAVSRWDA LWHRLTRSIW GRTQLLHDTW 60 HDEFVYWHRT AQNFHTGRSA HGTLAFDDVD NQDGYTCRCM TMSDRHLACG FADGAVRVFD 120 LAMHNHVVTL RPHEGNHLGQ FARAVSGIVI NGATLAFATL DGDIHVAMII GGGGVIRRAH 180 EGNVVNDGAL VDFTGCGSGR WWVGLYAGAP NRAFHIWDSV TEELVYVNGS LTNPESVMGW 240 HLLINENQFV GRVRVVTTII SEEEEDHQLA VACTSSRLIV FDLRNPAVTL FEEESNRGFI 300 VTSVDVSNDA RYIRVDNRGD ARVCRLGTLE EVCRFNIYGG GGGGRSGSQR RVMVMGCMNL 360 GYALMCVGGM IRVWEVLHGG YLYHFRERIG EVNAVVANER YVAAASSDRR IHLWDFGADQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028953353.1 | 1e-176 | transcriptional regulator STERILE APETALA-like | ||||
Swissprot | Q9FKH1 | 1e-143 | SAP_ARATH; Transcriptional regulator STERILE APETALA | ||||
TrEMBL | A0A498H913 | 1e-174 | A0A498H913_MALDO; Uncharacterized protein | ||||
STRING | XP_009343485.1 | 1e-173 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7687 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35770.1 | 1e-143 | SAP family protein |
Publications ? help Back to Top | |||
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