PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01606-augustus-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 568aa    MW: 61890.5 Da    PI: 7.7693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01606-augustus-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-173481148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT+ Ed +lv++v+++G g+W+++ r  g+ R++k+c++rw ++l
  maker-scaffold01606-augustus-gene-0.26-mRNA-1 34 KGPWTAAEDAILVEYVRKHGEGNWNAVQRNSGLARCGKSCRLRWANHL 81
                                                   79******************************************9986 PP
2Myb_DNA-binding51.81.9e-1687130146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++
  maker-scaffold01606-augustus-gene-0.26-mRNA-1  87 KGAFTPEEERLILELHAKYGNK-WARMAAQLP-GRTDNEIKNYWNT 130
                                                    799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2252981IPR017930Myb domain
SuperFamilySSF466899.36E-3132128IPR009057Homeodomain-like
SMARTSM007173.9E-143383IPR001005SANT/Myb domain
PfamPF002495.0E-153481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-233588IPR009057Homeodomain-like
CDDcd001671.61E-113681No hitNo description
PROSITE profilePS5129426.62482136IPR017930Myb domain
SMARTSM007173.6E-1786134IPR001005SANT/Myb domain
PfamPF002491.0E-1587130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2689135IPR009057Homeodomain-like
CDDcd001671.04E-1289130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MATNNSTGGV ATSEGGGSST GGAESGLGGA TLKKGPWTAA EDAILVEYVR KHGEGNWNAV  60
QRNSGLARCG KSCRLRWANH LRPNLKKGAF TPEEERLILE LHAKYGNKWA RMAAQLPGRT  120
DNEIKNYWNT RVKRRQRQGL PLYPHDIQPS SQTQNPNQTQ TQTQTQLQLQ HQYQSQSTPT  180
TPTTPTAPTT PTTPTTPTFH FQSHAHHHPS FSLSPTPPPP SNHQHQQHHS FPLSPSKPQQ  240
FTTNTTTSLP LFDPTNNSNT NTNTNTNTNT IPSSFTFHRP PPILGAPIRF KRYRETTGFS  300
LPLSPAPHTT TTTTTTNNNN NNNNNNNNNM ITSPTSITPL GQLSSTQLPD ISCFKFPLTF  360
SHGAPQLIST QLELDQMMSA YSMKQELPSS QLSPHHHPPP PATTMSAITI DTKVSAAAAN  420
PGCGNGLLED LLDEAHALAI SNQGLRTQSF LGVKEEKRVF DGFKHWEGSS TIDCSSGVKP  480
KEEPGVQINT MQEDLSKLLN VIPSTMQIPS DWYSDSGEVS NGQSSGVTDE NIGIDMQHIA  540
SLFPLGATTD HSHRTTGSCS WDNLPGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30321355107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902343.10.0transcription factor MYB120-like isoform X1
TrEMBLA0A2I4DX230.0A0A2I4DX23_JUGRE; transcription factor MYB86
STRINGXP_008385966.11e-156(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-70myb domain protein 101