PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01575-augustus-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 230aa    MW: 26692.5 Da    PI: 8.4622
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01575-augustus-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.7e-34211122102
                                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
                                   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 
                                                    Fl k+y ++ed+ ++++isw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv
  maker-scaffold01575-augustus-gene-0.20-mRNA-1  21 FLLKTYMLVEDPVTDDVISWNVEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKV 84 
                                                    9*************************************************************** PP

                                                    --SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                                   HSF_DNA-bind  66 kdeekkskskekiweFkhksFkkgkkellekikrkks 102
                                                     +++         weF ++ F+kg+kell++i+r+k 
  maker-scaffold01575-augustus-gene-0.20-mRNA-1  85 ATNR---------WEFCNDMFRKGEKELLCEIRRRKA 112
                                                    *999.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.21E-3216110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.3E-3617110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5117110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEGMCEKGLL EYVRKSSPPP FLLKTYMLVE DPVTDDVISW NVEGTAFVVW QPAEFARDLL  60
PTLFKHSNFS SFVRQLNTYG FRKVATNRWE FCNDMFRKGE KELLCEIRRR KAWSNKQQPV  120
APTQTSPQEL DEDQRSSSTS SSSGYITLID ENKRLKKENG VLNSELLSMK RKCKELLDLV  180
AKYAHSEKEE EDERPKLFGV RLEVPGEREM KRKRAEIRES ASILLSQSCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-211611015120Heat shock factor protein 1
5d5u_B6e-211611024129Heat shock factor protein 1
5d5v_B6e-211611024129Heat shock factor protein 1
5d5v_D6e-211611024129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902084.11e-158heat stress transcription factor B-3-like isoform X1
SwissprotO222307e-72HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2N9IBC91e-142A0A2N9IBC9_FAGSY; Uncharacterized protein
STRINGPOPTR_0016s05680.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-69heat shock transcription factor B3