PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01506-augustus-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 321aa    MW: 36026.1 Da    PI: 5.9436
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01506-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35241152102
                                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
                                   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 
                                                    Fl+k+++++ed++++++isw+++g++f+v++++ fak++Lpk+Fkh+nf+SFvRQLn+YgF+kv
  maker-scaffold01506-augustus-gene-0.29-mRNA-1  24 FLTKTFQLVEDRTINDVISWNDDGSTFIVWNPTVFAKDLLPKFFKHNNFSSFVRQLNTYGFRKV 87 
                                                    9*************************************************************** PP

                                                    --SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                                   HSF_DNA-bind  66 kdeekkskskekiweFkhksFkkgkkellekikrkks 102
                                                      ++         weF++++F++g+k+ll++i+r+k 
  maker-scaffold01506-augustus-gene-0.29-mRNA-1  88 VPDR---------WEFSNDYFRRGEKKLLCEIQRRKI 115
                                                    **99.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-3714108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5420113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3321113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.9E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAPAMEQNGE SATSESQRSI PTPFLTKTFQ LVEDRTINDV ISWNDDGSTF IVWNPTVFAK  60
DLLPKFFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNDYFR RGEKKLLCEI QRRKISTPVV  120
SPVTVASSAV PIVKQMISPS NSGDEQVVSA NSSPTRPTAP ADLIDENERL RKENVQLTKE  180
LAEIRSLCNN IFALMSNFAN NTNNNNKKSE LAGKPPLDLL PAKRYADDEE TETETESSAK  240
LFGVPIGGGG GAIAKRARES DDDDVTELRL QQPDPAKPEP LDCESNGHDH HHDGGDRKAT  300
WLIKHCHWDS NRNQRVYNGL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-22241175108Heat shock factor protein 2
5d8l_B2e-22241175108Heat shock factor protein 2
5d8l_D2e-22241175108Heat shock factor protein 2
5d8l_F2e-22241175108Heat shock factor protein 2
5d8l_H2e-22241175108Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885639.10.0heat stress transcription factor B-2a
SwissprotQ9SCW44e-85HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2N9FM281e-152A0A2N9FM28_FAGSY; Uncharacterized protein
STRINGGorai.007G010900.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-80heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]