PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01451-snap-gene-0.32-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 280aa MW: 31529 Da PI: 8.3305

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01451-snap-gene-0.32-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	115	134	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k F+r nL+ H+ maker-scaffold01451-snap-gene-0.32-mRNA-1 115 FSCHVCLKIFNRYNNLQMHL 134 89*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.51E-5	106	137	No hit	No description
PROSITE profile	PS50157	9.473	115	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.53E-5	184	219	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-4	195	219	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MKPFEISLSI NPLASSSSSD HTDTEPLNLF PSMDQNSLYP DPSLSNLPSW PTVSMKENPK 60 ACSDDNEDVT VALNIGLPNY SSGFIDANTM ETANIAANNY WIPTPEQIHI GFTHFSCHVC 120 LKIFNRYNNL QMHLWGHGSQ YRRGAYSLKG SQPQPMLSIP CYCCAEGCKN NISHPRAKPL 180 KDFRTLQTHY QRKHGEKPFA CRKCGKLLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK 240 DHIKAFGFGH SPCPPIFEGY DEVLKGTFPF HLCLVLLGHA

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914530.1	0.0	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-102	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A2N9EYG1	1e-152	A0A2N9EYG1_FAGSY; Uncharacterized protein
STRING	EOY15971	1e-130	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-104	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]