PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01199-augustus-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 260aa    MW: 29474.9 Da    PI: 5.6394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01199-augustus-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT eEd++lv+ +  +G  +W+++++  g++R++k+c++rw +yl
  maker-scaffold01199-augustus-gene-0.26-mRNA-1 14 KGPWTVEEDKKLVNFILTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                                                   79********************************************97 PP
2Myb_DNA-binding50.93.6e-1672111647
                                                    HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    + E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  maker-scaffold01199-augustus-gene-0.26-mRNA-1  72 EAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                                                    67***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21562IPR009057Homeodomain-like
PROSITE profilePS5129414.356961IPR017930Myb domain
SuperFamilySSF466893.55E-2711108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002492.8E-151461IPR001005SANT/Myb domain
CDDcd001675.16E-101661No hitNo description
PROSITE profilePS5129426.68162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2463117IPR009057Homeodomain-like
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
CDDcd001672.02E-1171112No hitNo description
PfamPF002492.1E-1472111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTVE EDKKLVNFIL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NEAEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPITHEPLN KEATQPNTLC QSLDQRDIED NHQESTKICG QASSIDNSSA PTENSSTGES  180
QSLDPGDNDL LMSYIWSESY LDDSLWNFPA TGEDYSNFGS SSPENYSEFS LNYKDFFGED  240
FGFGCFSDMD MNSQDMGGKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2384651e-125KC238465.1 Betula luminifera MYB transcription factor 2 (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871535.10.0protein ODORANT1-like
SwissprotQ50EX63e-95ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2N9HSS41e-174A0A2N9HSS4_FAGSY; Uncharacterized protein
STRINGPOPTR_0015s14600.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.15e-91myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]