PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01178-augustus-gene-0.35-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 380aa MW: 41808.9 Da PI: 6.5071 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 3.9e-31 | 178 | 236 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+geH+h+ maker-scaffold01178-augustus-gene-0.35-mRNA-1 178 ADVWAWRKYGQKPIKGSPYPRNYYRCSSTkGCTARKQVERSNTDPNTFIITYTGEHTHP 236 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-31 | 163 | 238 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-27 | 171 | 238 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.189 | 172 | 238 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-38 | 177 | 237 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-26 | 179 | 236 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MTDWDLNAVV RSCRYSTTTT TTNTTAASEN PLSCLASQTF KEESDPFSFP HFVEPRTNAF 60 QELEELCKPF FPTTAITATT ITTTSHGIKP NSSISDLQHR LHGSSSFGFR GILDQQRLQG 120 PQQQQQQQQH VYQQEFLKPQ ASSSMSLPTM QSQVPRARKR KNQQKRTVRH VTAENLSADV 180 WAWRKYGQKP IKGSPYPRNY YRCSSTKGCT ARKQVERSNT DPNTFIITYT GEHTHPRPTH 240 RNSLAGSVRN KFKSADAANT NGNIASCFSP QSASCLSPTT PLTVLQTDEE AANHNINEET 300 DKMIDGNDKE SEEMVDDDED DDILIPNIAM NEDIFMGFQE LGYGNSPGGG SGDNFSSGST 360 PRGGASSGSS WAPCGSAAAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-21 | 178 | 239 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-21 | 178 | 239 | 17 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023882168.1 | 0.0 | probable WRKY transcription factor 27 isoform X1 | ||||
TrEMBL | A0A2I4GTU1 | 1e-122 | A0A2I4GTU1_JUGRE; probable WRKY transcription factor 27 | ||||
STRING | cassava4.1_008781m | 1e-101 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6794 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 5e-61 | WRKY DNA-binding protein 27 |