PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01152-snap-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 605aa    MW: 66097.5 Da    PI: 9.2477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01152-snap-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0595117123
                                                EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                + C+ C+k F r  nL+ H r H
  maker-scaffold01152-snap-gene-0.16-mRNA-1  95 FICEVCNKGFQREQNLQLHRRGH 117
                                                89*******************88 PP
2zf-C2H213.10.00029171193123
                                                EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                +kC++C+k++  +s+ k H +t+
  maker-scaffold01152-snap-gene-0.16-mRNA-1 171 WKCEKCSKRYAVQSDWKAHSKTC 193
                                                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-794117No hitNo description
Gene3DG3DSA:3.30.160.606.8E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.0E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9995117IPR007087Zinc finger, C2H2
SMARTSM003550.005295117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355130136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-7166191No hitNo description
SMARTSM00355130171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
TTRATTSLKI EILEDGLVFL IHTVFWNQRR ESKPDNTTTF FYNHFLNYSN HSSSKEKEKP  60
TWKSKQFIVC HFSTTDPDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP  120
WKLKQKTNKE PKRKVYLCPE PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCEKCSKRY  180
AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARHP TNLNTMGSHL  240
FGSNHMSLGL SQLGSQIPPL QNQNPPSSNM LRLGSAGGAK FEHLISPSNP SSFGQPPQSM  300
HSSSLFIQDA NQGFPNKPQL HGLMQLPDLQ SNSNNSSPAA SLFNLSFFPN NNSSPGGISS  360
GDNVNMSSTN LSSSGLLMQD QLNNSNGGSQ GTTLFSTNMG DHVGSGVSSL YSNSLPPENI  420
TSHMSATALL QKAAQMGSTT SSNNSSSMLR GLASSKSEKQ NVLANFGVSF GNDNGGESLR  480
SHIESGNHLQ GLMNSLANAS SSMFGRGQDN NFGGFNGSGV TLDQHHSNTS FSTVDEAKLH  540
QNLAVNFGGS DKLTLDFLGV GGMVRNMGGG YSQREQQHAI NMSSLDPELK TAQQASQAFG  600
STTMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34167228364Zinc finger protein JACKDAW
5b3h_F3e-34167228364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918792.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_023918793.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2N9EG240.0A0A2N9EG24_FAGSY; Uncharacterized protein
STRINGEOY011980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-112indeterminate(ID)-domain 5