PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00988-augustus-gene-0.35-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 334aa MW: 36420 Da PI: 6.7048

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00988-augustus-gene-0.35-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.9e-34	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl maker-scaffold00988-augustus-gene-0.35-mRNA-1 48 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.844	45	105	IPR017930	Myb domain
SuperFamily	SSF46689	9.32E-18	47	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-32	47	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-10	134	156	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.4E-8	167	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MYQQKSVHSS SLVGNNSLVH GQHLDCVAST MDPINGGNNL NNASLASKQR LRWTHELHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKFLPDPS ADGKKADKKE 120 TGDMITNLDG SSGMQITEAL KLQMEVQKRL HEQLEACTEL PLVLFIVQRQ LQLRIEAQGK 180 YLKKIIEEQQ RLSGVLSETT DSGVPGPASG DNCLDSDNKT DPATPAPTSE APLLDKAAKE 240 GAPASLSIDE SFSSHHEPLT PDSGCHAGSP TESPRGERSM KKQRVSMGGV YAKSEMVLPH 300 QILESSLSSS YQQPHSVFLS REQFEPPSGN INQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-23	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023903823.1	0.0	uncharacterized protein LOC112015623
Swissprot	Q9SJW0	1e-125	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2I4DDX1	0.0	A0A2I4DDX1_JUGRE; myb family transcription factor PHL7-like isoform X1
STRING	VIT_00s0475g00040.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-121	G2-like family protein