PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00940-augustus-gene-0.40-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 881aa    MW: 96325.9 Da    PI: 5.6822
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00940-augustus-gene-0.40-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR29.31.8e-095685921640
                                            TCR  16 kYCeCfaagkkCseeCkCedCkNke 40 
                                                     YCeCfaag +C e C+C+dC+Nk 
  maker-scaffold00940-augustus-gene-0.40-mRNA-1 568 SYCECFAAGLYCVEPCSCQDCFNKP 592
                                                    6**********************96 PP
2TCR50.93.1e-16639677139
                                            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                                    ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+C++CkN 
  maker-scaffold00940-augustus-gene-0.40-mRNA-1 639 RHKRGCNCKKSSCLKKYCECFQGGVGCSINCRCKGCKNA 677
                                                    589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-4499594IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.452500679IPR005172CRC domain
PfamPF036387.3E-6568591IPR005172CRC domain
SMARTSM011143.2E-17639680IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-12641677IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MDTPVKNQLA TTSKFEDSPV FNYISNLSPI EPVKSIPTDH AFTSLTFASP SSVFPSPQIG  60
IRKESRFSIR RHQFSDPSKN ESSQIGNKNN TSEGVSVAVQ PSDSCTENFE CCTSASSARE  120
ITTEPTDEPS GLVIELPNTL KYDCGSPDSD MVPPDATKTD TAPGIAGTLE SFDEFLMDDS  180
KGKLHSFESE KNLRNICSIE QNIEACDWVS FVSGAADLLN LDSSMIEEHF EGQNHKSVDP  240
GTISFLSTVL QLPQDNANDV EKTEAISIIS CKQREMGETV TQSRAIGNLK KTDQTSAILS  300
STLLDKLAVS DLSDKVDDKG KKCMDSSSKP GSHRLCSIRR RCLVFETSGA HKNKPICDSN  360
SSSPAIPSDC EVFPNEKQAQ INTASGYSST MLPGIGLHLN ALATAPTDNK VVKLESPAFR  420
SKQIIMLNSL VPCNPLTPGQ NPLDKSLTLK TLEGELASHY NEAQVTENAP QTSTSAVSEE  480
FDQSSPRRKR HLEHVEESNA CKRCNCKRSK CLKLRFKGYS NGFSTSHGAW ALSQSKMSFL  540
KVVLTTEGST VSDLIDPCSL TGHVLQYSYC ECFAAGLYCV EPCSCQDCFN KPIHESTVLE  600
TRRNIESRNP LAFAPKVIRD ADVVPEFGDE SNKTPASARH KRGCNCKKSS CLKKYCECFQ  660
GGVGCSINCR CKGCKNAFGR KDGAEETDIE GEELEACKMN ALDASLHTVK EDDKEHLEFP  720
ITELSENSRS LSQESEACKN ALEISLQEVN ESEKEHPDLS ITPSSEISRP SIRLPFSFSG  780
KLPLSSLLSV GSSAQFCTSQ KPRTKYSFSS RLKFETHLQM IPEDETPEAL NSTSDVKSTS  840
PNSKRVSPPK QEFGSTAQRM GRKLILRSIP PFPSLSSTGE Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1255767613120Protein lin-54 homolog
5fd3_B9e-1255767613120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913149.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A2N9FIW00.0A0A2N9FIW0_FAGSY; Uncharacterized protein
STRINGVIT_14s0030g01800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.18e-74Tesmin/TSO1-like CXC domain-containing protein