PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00805-augustus-gene-0.56-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WOX
Protein Properties Length: 289aa    MW: 32162.3 Da    PI: 6.509
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00805-augustus-gene-0.56-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-192989357
                                                   --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                       Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                                   +R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  maker-scaffold00805-augustus-gene-0.56-mRNA-2 29 TRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrkygKIEGKNVFYWFQNHKARERQ 89
                                                   6*****************8678*************************************97 PP
2Wus_type_Homeobox112.91.6e-362891365
                              Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                                    tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  maker-scaffold00805-augustus-gene-0.56-mRNA-2 28 ITRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRKYGKIEGKNVFYWFQNHKARERQKK 91
                                                   58***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-112496IPR009057Homeodomain-like
PROSITE profilePS5007110.0252490IPR001356Homeobox domain
SMARTSM003894.9E-62694IPR001356Homeobox domain
PfamPF000463.6E-172989IPR001356Homeobox domain
CDDcd000861.95E-72991No hitNo description
Gene3DG3DSA:1.10.10.602.6E-73089IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEPQNQQQQA LNEDGGSGKG GYLCRPSITR WTPTTDQIRI LKDLYYNNGV RSPSAEQIQR  60
ISARLRKYGK IEGKNVFYWF QNHKARERQK KRLNSDVPMQ RGVGVGNTNW NSTPEESIHT  120
KYPLPNITSG ISASSLSSGV ITVGHMGNYG YGSVTMEKSF RNCSISNGGN NGGVGGSIGH  180
NSGCVGVDPY SSSYSTFFDK RRLMEENLGG QEDEEEEEEE VEAGEKETLP LFPMHAEDIN  240
GFCNMNPYTT NGHYMYTSCY RSADDGINGS RTSLELSLNS YCHRSSPYH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4474181e-79AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905918.11e-167protein WUSCHEL
SwissprotQ8LL112e-83WUS_PETHY; Protein WUSCHEL
TrEMBLA0A2I4FMY91e-122A0A2I4FMY9_JUGRE; protein WUSCHEL-like
STRINGGLYMA01G37190.21e-106(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-39WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]