PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00766-augustus-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 392aa    MW: 44817.1 Da    PI: 4.8342
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00766-augustus-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35141052102
                                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
                                   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 
                                                    Fl+k+ye+++d+++++++sws+n++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k+
  maker-scaffold00766-augustus-gene-0.33-mRNA-1  14 FLTKTYEMVDDPSTDSVVSWSANNKSFIVWNPLEFARDLLPRFFKHNNFSSFIRQLNTYGFRKI 77 
                                                    9*************************************************************** PP

                                                    --SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                                   HSF_DNA-bind  66 kdeekkskskekiweFkhksFkkgkkellekikrkks 102
                                                    + e+         weF++++F +g+ +ll++i+r+k 
  maker-scaffold00766-augustus-gene-0.33-mRNA-1  78 DPEQ---------WEFANEEFIRGQPHLLKNIHRRKP 105
                                                    9998.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDEGQGSSNS LPPFLTKTYE MVDDPSTDSV VSWSANNKSF IVWNPLEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEEFI RGQPHLLKNI HRRKPVHSHS LQNLQGQGCA  120
SPLSESERQS LKDEIEGLKH ERERLLLELQ RHEEERQGFE MQVQLYKERL QHVERQQQKM  180
ISSVAQVLRK PGLPLNLVTQ LENHDRKRRL PRIGYFYDEA SIEDTQMGTS QTVPGDSGLS  240
ACALTSNVEP FEHVQSTLFV WENLLRDVSE TFMKFNSNPD LDESTSCDES PTISCVQLNV  300
DVRPKSPGID MNSEPATAAV LEPIEPDASK EQGLVATTVP TGVNDVFWEQ FLTENPGAAD  360
TQEVQSERKE PMAERMKQNL VFMANYSRVS GM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25410319129Heat shock factor protein 1
5d5v_B2e-25410319129Heat shock factor protein 1
5d5v_D2e-25410319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879311.10.0heat stress transcription factor A-4a-like
SwissprotO494031e-122HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2N9IEE40.0A0A2N9IEE4_FAGSY; Uncharacterized protein
STRINGXP_002522270.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-116heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]