PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00656-augustus-gene-0.49-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 679aa    MW: 75284.1 Da    PI: 8.8421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00656-augustus-gene-0.49-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07580629147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                                    r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  maker-scaffold00656-augustus-gene-0.49-mRNA-2 580 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 629
                                                    678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.79E-6376482IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.654575634IPR017930Myb domain
SMARTSM007173.5E-7579632IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10580630IPR009057Homeodomain-like
CDDcd116601.77E-16581631No hitNo description
SuperFamilySSF466891.71E-15581662IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MPRATRSARK RGTFRKRTED NQMCAFDLLA TVAGNIWLEK ESSPTSSNTS NEKNGCAFVQ  60
KAWENEDKPV KIEPSFQESS DKRVLVSELV HQAGDQNFSY RESPLPQNDV HSGLASVLTT  120
ECSEVFVAEK LVNGENNNEM GSFTSNVDLG FSGYRDSGNC KLDCENKLII KDDLHKTGKV  180
PIGIGADMCS LEDPVVCDGR PPALVSSDSS VKVPLCGDHI PCSSFPAIRD DVKIVSRDDD  240
ENSSGCTHPS TIAKSSRPVS RIADRRIRKI LASKYWKVSS KLKEETLSNV DGDLKPIFRN  300
RKGYYKRQRS QMNIPFKKRK IFQRSSVSNS DRWISYGGNS HSTEKGINGD DLGSCLKMHG  360
ASGTSSSLVG QHTSIQSRDS YVKLRIKSFR VPELLIEMSE TATVGSLKDI IFRKSHVTYA  420
EAQRAVMEAV TSILGGGLRV GVLLQGKKVR DDNKTLQQTG IAHDYPLDAL GFTLEPNPAQ  480
NPPPLCPRDS SCMLPCDTPQ PLTRIKGDSH ASPELHAANL GTFIESDHDS APSPTDTSVD  540
KSTTDSKALV AVSAMDVDEL AVVPVHRKLK RSEMAQRRIR RPFSVTEVEA LVQAVEKLGT  600
GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLSAHAYW  660
SQQQAKQQLK QQPETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-575646701107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941307e-71BT094130.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904359.10.0telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A2I4EV520.0A0A2I4EV52_JUGRE; telomere repeat-binding protein 5-like isoform X1
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-122TRF-like 2