PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00656-augustus-gene-0.49-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 697aa    MW: 77390.6 Da    PI: 8.9236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00656-augustus-gene-0.49-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07598647147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                                    r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  maker-scaffold00656-augustus-gene-0.49-mRNA-1 598 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 647
                                                    678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.84E-6394500IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.654593652IPR017930Myb domain
SMARTSM007173.5E-7597650IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10598648IPR009057Homeodomain-like
SuperFamilySSF466891.71E-15599680IPR009057Homeodomain-like
CDDcd116601.58E-16599649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MVLQKRLDYG FIGYQVPPMP RATRSARKRG TFRKRTEDNQ MCAFDLLATV AGNIWLEKES  60
SPTSSNTSNE KNGCAFVQKA WENEDKPVKI EPSFQESSDK RVLVSELVHQ AGDQNFSYRE  120
SPLPQNDVHS GLASVLTTEC SEVFVAEKLV NGENNNEMGS FTSNVDLGFS GYRDSGNCKL  180
DCENKLIIKD DLHKTGKVPI GIGADMCSLE DPVVCDGRPP ALVSSDSSVK VPLCGDHIPC  240
SSFPAIRDDV KIVSRDDDEN SSGCTHPSTI AKSSRPVSRI ADRRIRKILA SKYWKVSSKL  300
KEETLSNVDG DLKPIFRNRK GYYKRQRSQM NIPFKKRKIF QRSSVSNSDR WISYGGNSHS  360
TEKGINGDDL GSCLKMHGAS GTSSSLVGQH TSIQSRDSYV KLRIKSFRVP ELLIEMSETA  420
TVGSLKDIIF RKSHVTYAEA QRAVMEAVTS ILGGGLRVGV LLQGKKVRDD NKTLQQTGIA  480
HDYPLDALGF TLEPNPAQNP PPLCPRDSSC MLPCDTPQPL TRIKGDSHAS PELHAANLGT  540
FIESDHDSAP SPTDTSVDKS TTDSKALVAV SAMDVDELAV VPVHRKLKRS EMAQRRIRRP  600
FSVTEVEALV QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG  660
EPVPQELLDR VLSAHAYWSQ QQAKQQLKQQ PETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-575826881107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941308e-71BT094130.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904359.10.0telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A2I4EV520.0A0A2I4EV52_JUGRE; telomere repeat-binding protein 5-like isoform X1
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-133TRF-like 2