PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00223-augustus-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 279aa    MW: 32083.3 Da    PI: 8.2079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00223-augustus-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151360148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   rg+W++ Ed +l++++k +G g W+  +++ g++R++k+c++rw++yl
  maker-scaffold00223-augustus-gene-0.21-mRNA-1 13 RGAWSAREDNILKNYIKIHGEGKWTDLPQRAGLRRCGKSCRLRWLNYL 60
                                                   89********************************************97 PP
2Myb_DNA-binding568.9e-1866110147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    rg+++++E++l+++++k+lG+  W++Iar+++ gRt++++k++w++ 
  maker-scaffold00223-augustus-gene-0.21-mRNA-1  66 RGNFSEDEEDLIIKLHKLLGNS-WSLIARRLP-GRTDNEIKNYWNTI 110
                                                    89******************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.413860IPR017930Myb domain
SuperFamilySSF466891.91E-2811107IPR009057Homeodomain-like
SMARTSM007176.6E-121262IPR001005SANT/Myb domain
PfamPF002498.3E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-221467IPR009057Homeodomain-like
CDDcd001673.92E-91560No hitNo description
PROSITE profilePS5129426.62661115IPR017930Myb domain
SMARTSM007171.9E-1765113IPR001005SANT/Myb domain
PfamPF002493.7E-1666110IPR001005SANT/Myb domain
CDDcd001671.32E-1268111No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2568115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEGRPYCPKG VIRGAWSARE DNILKNYIKI HGEGKWTDLP QRAGLRRCGK SCRLRWLNYL  60
RPDIKRGNFS EDEEDLIIKL HKLLGNSWSL IARRLPGRTD NEIKNYWNTI LSKRVQGDKI  120
HEQSSRRIRK LTSDSNPGIN PVAHPVIRPK AVRCTKVILP WQADNNQVFN ENIVPYENSE  180
NLFPSVQPEN NISDFLIDLD INYLLRSDVR NSDGHQTNEI NVRDIVLDLP VSGCDAKLKG  240
LMDEGKPENW RATNPFQPNE AMDLNTLASF LDSEDTWIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24111155108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345873e-52AB434587.1 Fagus crenata FcMYBGAP2 mRNA for transcription factor MYBGAP2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911881.10.0transcription factor MYB4-like
SwissprotP102909e-55MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2N9HNK71e-122A0A2N9HNK7_FAGSY; Uncharacterized protein
STRINGEOY303005e-84(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-57MYB family protein
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]