PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00097-augustus-gene-1.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 260aa    MW: 29461.4 Da    PI: 8.666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00097-augustus-gene-1.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.5e-2997156159
                                                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +C+vkkkv+r+ ed+++++ tY geHnhe
  maker-scaffold00097-augustus-gene-1.22-mRNA-1  97 VKDGYQWRKYGQKVTKDNQSPRAYFRCSMApECRVKKKVQRCMEDKSILVATYDGEHNHE 156
                                                    58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2887156IPR003657WRKY domain
PROSITE profilePS5081123.74392158IPR003657WRKY domain
SuperFamilySSF1182901.44E-2493156IPR003657WRKY domain
SMARTSM007743.9E-3197157IPR003657WRKY domain
PfamPF031062.4E-2398156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEPHISYKEK VETLEEDLER LRKENETLRF MVSAMNNKCN ILQARLQEMK VEQMGINFTQ  60
SGSLYKTKKR ARTEIPIQTK TKQIFVRTDS KDTSLIVKDG YQWRKYGQKV TKDNQSPRAY  120
FRCSMAPECR VKKKVQRCME DKSILVATYD GEHNHEAHGS LGDSSSSSDI VNTGSIANVF  180
SPPCMAYNNP FPPAIALDLS LSVPNQESRI PFQNFVEDYH SNYNKIEEYV ASLTKDANFT  240
AALAAAVASS IADQPKISKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17961561372WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894039.11e-164probable WRKY transcription factor 40
TrEMBLA0A2N9H6031e-124A0A2N9H603_FAGSY; Uncharacterized protein
STRINGVIT_04s0008g05750.t016e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-39WRKY DNA-binding protein 40