PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold12659-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 216aa    MW: 24679.7 Da    PI: 5.1171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold12659-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-061034123
                                                          EEET..TTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                                          + Cp  dCgk++ + + Lk+Hi +H
  augustus_masked-scaffold12659-abinit-gene-0.0-mRNA-1 10 HICPypDCGKRYAHEYKLKNHIASH 34
                                                          679999*****************96 PP
2zf-C2H214.88e-057398123
                                                          EEET..TTTEEESSHHHHHHHHHH.T CS
                                               zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                                                          y Cp   C k + + + Lk H+r+ H
  augustus_masked-scaffold12659-abinit-gene-0.0-mRNA-1 73 YACPyeGCEKAYIHEYKLKLHLRReH 98
                                                          89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-6136No hitNo description
Gene3DG3DSA:3.30.160.602.4E-9136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00281034IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.641040IPR007087Zinc finger, C2H2
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-96796IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.11E-66896No hitNo description
SMARTSM003550.00897398IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01473103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807598IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKTHSQENYH ICPYPDCGKR YAHEYKLKNH IASHHEKNVP VDVAKYTPPS EKQNKAPKPS  60
SGVYASASSD RPYACPYEGC EKAYIHEYKL KLHLRREHPG HTSDENAENA AANADNEMDE  120
ASDQDAYVGK RSNGKSQKQS RPKPNLKLPP AKITQRKSST PSPAPVNVMK KPWPAKEEAY  180
EEEDSEETEE DRDNVEDGWR YAENNEDDDE ETEYED
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885432.11e-116zinc finger transcription factor YY1 isoform X1
RefseqXP_023885433.11e-116zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L35e-72YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2N9HQ801e-119A0A2N9HQ80_FAGSY; Uncharacterized protein
STRINGEMJ244991e-111(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-63C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]