PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold10159-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 282aa MW: 31653.9 Da PI: 4.2215

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold10159-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.2e-38	32	88	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++s+ augustus_masked-scaffold10159-abinit-gene-0.1-mRNA-1 32 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRSK 88 58****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	16	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-32	32	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.668	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MFTTSCDQML QFPSRPLQIM DRMLKPNVEI APNCPRCASS NTKFCYYNNY SLSQPRYFCK 60 GCRRYWTKGG SLRNVPVGGG CRKNRRSKSS RQLPQTQRVS VTNSSNYAND QSTDSSSSNG 120 DSSTNGSDID LAVVFANFLN QNPNNNIEQP EFVTVPDLVP NDSNPQSDSP NCLTSSAFES 180 QKPIEEGDIL FQGLGQDEKV QEFMEDDEVN AFGLQSLLDD EVVQDVLWSD TASLPNLMWQ 240 PMVQVQELES FQSNDQLRIS NNLINDCWSS LDLSGFEGFL RP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023895272.1	0.0	dof zinc finger protein DOF3.5-like
TrEMBL	A0A2N9EKA9	1e-128	A0A2N9EKA9_FAGSY; Uncharacterized protein
STRING	EOY16653	2e-94	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	2e-43	Dof family protein