PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold10132-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HSF

Protein Properties

Length: 111aa MW: 11983.4 Da PI: 5.5299

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold10132-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	48.9	1.8e-15	41	87	2	48
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs 48 Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+ augustus_masked-scaffold10132-abinit-gene-0.0-mRNA-1 41 FLSKTYDMVDDPATDPILSWSPTNNSFVVWNPPEFARDLLPKYFKHR 87 9******************999********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.8E-18	32	87	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.08E-15	36	87	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-12	37	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-8	41	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.9E-12	41	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-8	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MESVVTTESD SAVSSGSVGG GAQQQQQGPS PMQSGNGPPP FLSKTYDMVD DPATDPILSW 60 SPTNNSFVVW NPPEFARDLL PKYFKHRIGC VAMHVVTPHL VAENPFRKIG N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-13	39	86	27	74	Heat shock factor protein 1
5d5v_B	6e-13	39	86	27	74	Heat shock factor protein 1
5d5v_D	6e-13	39	86	27	74	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:7948881}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023923292.1	3e-32	heat shock factor protein HSF8
Swissprot	P41151	7e-26	HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBL	A0A2N9G103	1e-32	A0A2N9G103_FAGSY; Uncharacterized protein
STRING	Gorai.008G225200.1	4e-31	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1592	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	4e-25	heat shock factor 1

Publications ? help Back to Top
Hsu SF,Jinn TL AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs. Plant Signal Behav, 2010. 5(8): p. 1042-4 [PMID:20657173] Liu HC,Charng YY Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development. Plant Physiol., 2013. 163(1): p. 276-90 [PMID:23832625] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors. J. Exp. Bot., 2016. 67(21): p. 6139-6148 [PMID:27811081]