PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold09580-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 213aa    MW: 23580.1 Da    PI: 8.6708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold09580-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1989140155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           ++ykGVr+++ +g+++AeIrdp++ng   r++lg++  +++Aa a+++a+ k++g
  augustus_masked-scaffold09580-abinit-gene-0.0-mRNA-1  89 PHYKGVRRRP-WGKYAAEIRDPKKNG--SRVWLGTYAKPKDAALAYDRAAFKMRG 140
                                                           68********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.74E-2889150No hitNo description
PfamPF008471.1E-1389140IPR001471AP2/ERF domain
SMARTSM003802.4E-3790154IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2290149IPR016177DNA-binding domain
PROSITE profilePS5103222.35290148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3190149IPR001471AP2/ERF domain
PRINTSPR003673.5E-1391102IPR001471AP2/ERF domain
PRINTSPR003673.5E-13130150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSDLAVLEW IRQYLLGESE TFDDVEVCLG NVFTSETTNW GSSSLLKADD NNVNFGWVPS  60
NEGFDDPVKA TRREANKEAV AVARETHAPH YKGVRRRPWG KYAAEIRDPK KNGSRVWLGT  120
YAKPKDAALA YDRAAFKMRG SKAKLNFPHL IGSNMEEPPR VTHKRRSPEP SSPSDNGSAE  180
SKRSRSRSGS VVQAESSNGS CTIKEVSSEA MDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2990153568ATERF1
3gcc_A5e-2990153568ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926847.11e-116ethylene-responsive transcription factor 13-like
SwissprotQ8L9K15e-46ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2N9F6G19e-71A0A2N9F6G1_FAGSY; Uncharacterized protein
STRINGXP_008232470.12e-51(Prunus mume)
STRINGEMJ049491e-51(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-47ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]