PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 530aa    MW: 59527.8 Da    PI: 4.6993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.67.4e-1091545231374
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           lv+lLl+cAeav  +d++la+++L+++   asp gd++qR+  +f+ +L++rl+   
  augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1 154 LVHLLLACAEAVGCRDTQLADSILNQIWVSASPWGDSLQRVSYCFATGLKSRLSL-L 209
                                                           68***************************************************98.5 PP

                                                  GRAS  58 selykalppsetsekn....sseelaalklfsevsPilkfshltaNqaIleavegee 110
                                                           +++ +  + ++ ++++     +e+  a++l+++++P++ f++++aN+aI +a++g++
  augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1 210 HNVNANGTFTNGAKEKplitREEKSEAFQLLYQTTPYIAFGFMAANEAICQAAKGKD 266
                                                           55555555555555556777899999******************************* PP

                                                  GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                                            +H+ D++++  lQWp+L+++LasRpegpp+lRiTg+ s  ++   ele   + L +
  augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1 267 SLHVMDIGMETTLQWPSLIRTLASRPEGPPNLRITGLIS--EHYLSELEVSMKILVD 321
                                                           ***************************************..55999999999***** PP

                                                  GRAS 168 fAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223
                                                            A++lg+++efn++    + + l+ e+L++++gE+l Vn++++lh++++es  + + 
  augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1 322 DASTLGLTLEFNMISGPvTPSVLTKENLNLREGETLFVNSIMHLHEFVKESRGSLK- 377
                                                           *************8444588999*************************88777666. PP

                                                  GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                                                             ++L+++k+l+P+v++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s 
  augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1 378 --AILQAIKKLRPTVLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSA 432
                                                           ..9****************************************************** PP

                                                  GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                                                           +r+k+E   +++ei+n+va eg  r+erhe+  +Wr++l++aGF+ + +  k ++qa
  augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1 433 QRMKIEFL-FAEEIRNIVAFEGIIRVERHERIDQWRRQLGRAGFQVMGM--KCMSQA 486
                                                           *****965.************************************9876..68**** PP

                                                  GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           k+l++ ++ dgy++ +e+g+l+lgWk+rp++++SaW+
  augustus_masked-scaffold09132-abinit-gene-0.3-mRNA-1 487 KMLISVYGCDGYTLSSEKGCLLLGWKGRPIIFASAWQ 523
                                                           ************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.03128505IPR005202Transcription factor GRAS
PfamPF035142.6E-106154523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAALNGWSSF PLHENLDHDL AIRRFCPARV EQEHGECEWE DELLNELELC SPSHTTTLPC  60
LPAPEVDEFV DSCINMDHYD KECSNLQHDF DLFQEEMETF SLVNDVYGDA SMMIEGDGLE  120
MSGSFEDFRV PDPEMVPSVQ EEVSHGDLNQ GLHLVHLLLA CAEAVGCRDT QLADSILNQI  180
WVSASPWGDS LQRVSYCFAT GLKSRLSLLH NVNANGTFTN GAKEKPLITR EEKSEAFQLL  240
YQTTPYIAFG FMAANEAICQ AAKGKDSLHV MDIGMETTLQ WPSLIRTLAS RPEGPPNLRI  300
TGLISEHYLS ELEVSMKILV DDASTLGLTL EFNMISGPVT PSVLTKENLN LREGETLFVN  360
SIMHLHEFVK ESRGSLKAIL QAIKKLRPTV LTVVEQDANH NGPFFLGRFL ESLHYYSAIF  420
DSLEASLPRN SAQRMKIEFL FAEEIRNIVA FEGIIRVERH ERIDQWRRQL GRAGFQVMGM  480
KCMSQAKMLI SVYGCDGYTL SSEKGCLLLG WKGRPIIFAS AWQVHNVLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6116152226378Protein SCARECROW
5b3h_A1e-6116152225377Protein SCARECROW
5b3h_D1e-6116152225377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924375.10.0DELLA protein RGL1-like
TrEMBLA0A2N9E9H60.0A0A2N9E9H6_FAGSY; Uncharacterized protein
STRINGXP_004306565.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-81RGA-like 1