PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08938-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 648aa    MW: 73821.9 Da    PI: 8.7214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08938-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-08460501240
                                                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
                                       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                                                           ++W++eE ell ++ +++++g   +W+ +++++g+gR+ +++
  augustus_masked-scaffold08938-abinit-gene-0.0-mRNA-1 460 KPWSKEEIELLRKGMQKYPKGtsrRWEVVSEYIGTGRSVEEI 501
                                                           69***********************************99876 PP
2Myb_DNA-binding30.49.3e-10591637347
                                                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                                            W++  ++ lv+a k ++++   +W+++a+ ++ g+t +qck ++ ++
  augustus_masked-scaffold08938-abinit-gene-0.0-mRNA-1 591 VWSAVQEKALVQALKTFPKEtnqRWERVAAAVP-GKTVNQCKKKFTSL 637
                                                           7********************************.*********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.1E-2192195IPR001623DnaJ domain
SuperFamilySSF465655.1E-2093201IPR001623DnaJ domain
SMARTSM002715.8E-1495170IPR001623DnaJ domain
PROSITE profilePS5007618.50196178IPR001623DnaJ domain
PfamPF002261.8E-1796175IPR001623DnaJ domain
CDDcd062571.01E-1296167IPR001623DnaJ domain
PRINTSPR006253.4E-9101119IPR001623DnaJ domain
PRINTSPR006253.4E-9119134IPR001623DnaJ domain
PRINTSPR006253.4E-9150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
SuperFamilySSF466891.12E-7455502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-5456501IPR009057Homeodomain-like
PROSITE profilePS512936.636457512IPR017884SANT domain
SMARTSM007177.3E-7458511IPR001005SANT/Myb domain
PfamPF002495.3E-7460501IPR001005SANT/Myb domain
CDDcd001674.78E-5461501No hitNo description
PROSITE profilePS512939.767587642IPR017884SANT domain
SMARTSM007172.3E-10588640IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-9590644IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-6591637IPR009057Homeodomain-like
PfamPF002492.9E-8591637IPR001005SANT/Myb domain
CDDcd001675.89E-7592638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAVSKNLRLI AYSQEIVDGQ PIYVSSNCLP SKALRYEPAG HAFHAAALKL RGYEEEDADV  60
DDKKVVDDKE QMYLPSSDSY SSKGKKKSGD GAKQQDHYAL LGLSHVRYLA TEDQIKKSYR  120
EAALRFHPDK QAALLLAEET EAAKQAKKDE IENHFKSIQE AYEVLIDPVK RRIYDSTDEF  180
DDDIPTDCAP QDFFKVFGPA FLRNGRWSVS QPIPTLGEDN TPLKEVDNFY NFWYTFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLA EKARKEEYVR IRSLVDNAYK RDPRILKRKE  300
VEKAEKQRKK EAKYLAKKLQ EEEAARIAEE ERRRKEEEEK RAAEAASLQK KAKEKEKKLL  360
RKERTRLRTS SGSVVSQHLL DLSGDDVESL CMSLDIEQLR SLCDRMEHTE GLEQAKVLRD  420
ALGYNSDSKG KKVDEHTPQQ NGSVVANGNV PLSSFEKKEK PWSKEEIELL RKGMQKYPKG  480
TSRRWEVVSE YIGTGRSVEE ILKATKTVLL QKPDTAKAFD SFLEKRKPAP SIASPLTTRE  540
EIEGVSTTQA SQSSSATKID NPEGSPTRST NDQNPSDSSA ANGVSSPEQD VWSAVQEKAL  600
VQALKTFPKE TNQRWERVAA AVPGKTVNQC KKKFTSLKES FRNKKTAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-1919229520123Zuotin
5dje_B6e-1919229520123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023909382.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2N9F5D20.0A0A2N9F5D2_FAGSY; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain