PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08006-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 534aa    MW: 58771.1 Da    PI: 8.574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08006-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.7e-32196252360
                                                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                                           DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geH h+
  augustus_masked-scaffold08006-abinit-gene-0.0-mRNA-1 196 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHSHS 251
                                                           9***************************************.***************8 PP

                                                           - CS
                                                  WRKY  60 k 60 
                                                           k
  augustus_masked-scaffold08006-abinit-gene-0.0-mRNA-1 252 K 252
                                                           5 PP
2WRKY33.96.2e-11396416222
                                                           --SS-EEEEEEE--TT-SS-E CS
                                                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                                                            Dg++WrKYGqK+vkg+++pr
  augustus_masked-scaffold08006-abinit-gene-0.0-mRNA-1 396 TDGFRWRKYGQKVVKGNPYPR 416
                                                           6*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-29190253IPR003657WRKY domain
SuperFamilySSF1182901.83E-25193253IPR003657WRKY domain
SMARTSM007742.9E-36194252IPR003657WRKY domain
PfamPF031064.9E-25196250IPR003657WRKY domain
PROSITE profilePS5081123.112196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-11380418IPR003657WRKY domain
SuperFamilySSF1182901.11E-8389417IPR003657WRKY domain
PROSITE profilePS5081113.907390432IPR003657WRKY domain
SMARTSM007741.6E-5395434IPR003657WRKY domain
PfamPF031064.8E-7397418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDTKEAERIV IAKPVASRPT CSTFRSFSEL LAGAINASPS NVCSETAVAA IRPKTVRFKP  60
VVNHSPVGLV SSQAEISGTA VCNSSDKVLK LDSKSTVVYK PLAKLASKRT VSLLANMGNF  120
NTSLQQPQPS VDASVQHPNQ EKHKFRPLLS TNLHQNIPSY VETNRTVGPS KIASQNLEED  180
AKALPPTANG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSLDGQIA  240
EIVYKGEHSH SKPQPPKRNS SGTQALAIVS DGTGQDANTP SWANHNNEGN ESSEGRVENQ  300
NEVGLSAPLT YPGKAIVPRD PVSTGAINAG GGTPDNSCGL SGECEEGSKA IEPEDDEPRS  360
KRRKSENQSN EAGTSGDGVQ EPRIVVQNAT DTEITTDGFR WRKYGQKVVK GNPYPRFCEK  420
VSFEIKLQHH ACGKFVHRLE FVLHLSACGL EVIIDVLVSS AMCANMWKEH QMIQKLLSPP  480
MRENITMRCQ SRTQIQWPLK QIHCLLKVKT SDDELTPWIE NFINPSFDQS DNVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-181962531674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6153592e-37KC615359.1 Chrysanthemum x morifolium WRKY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893319.10.0WRKY transcription factor 44
RefseqXP_023893320.10.0WRKY transcription factor 44
TrEMBLA0A1Y0K3X50.0A0A1Y0K3X5_9ROSI; WRKY transcription factor
STRINGVIT_08s0040g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.18e-90WRKY family protein