PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold07895-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 277aa    MW: 30312.7 Da    PI: 4.4708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold07895-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-1865115155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           ++y+GVr+++ +g+WvAeI++ps    rkr +lg+f ta +Aa a+++a+  ++g
  augustus_masked-scaffold07895-abinit-gene-0.0-mRNA-1  65 CHYRGVRQRS-WGKWVAEICEPSG---RKRLWLGTFKTAVDAASAYDEAASTMYG 115
                                                           79*****999.********99854...6**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-1365115IPR001471AP2/ERF domain
CDDcd000182.32E-3165124No hitNo description
PROSITE profilePS5103220.57466123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3066124IPR001471AP2/ERF domain
SMARTSM003801.1E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2066124IPR016177DNA-binding domain
PRINTSPR003671.3E-96778IPR001471AP2/ERF domain
PRINTSPR003671.3E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVMDNPDQKK RKRKTRGDSV TETLAKWKER NAAQFESCGA PKVQAKGTKK GCCMKGRGGP  60
ENPQCHYRGV RQRSWGKWVA EICEPSGRKR LWLGTFKTAV DAASAYDEAA STMYGSSARL  120
NFPDITSRTS PMESVKDCCW TSPESVPYST LGSPVGSVPT TAATPSEFCA DEDSLYYLVT  180
EADIPSLVGI EDEDESTGVS EFCADEGTLY YPVTEAKDES TCMAKYFGEN GQENLLDSSE  240
NVNFMYEIMA LLNDPVGNTD SVLGFGYDAD QLGLGKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1866123260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1813KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916289.11e-172dehydration-responsive element-binding protein 2A-like
SwissprotQ8LFR22e-39DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A1L6CAW95e-49A0A1L6CAW9_9ROSI; AP2/ERF domain-containing transcription factor (Fragment)
STRINGcassava4.1_029110m1e-46(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-35ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]