PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05990-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29055.4 Da    PI: 9.3286
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05990-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551.1e-171151343
                                                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                                                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                                          i n+s r+ tf kR++g+lKK +ELS+LCd++ + ii+s+ 
  augustus_masked-scaffold05990-abinit-gene-0.2-mRNA-1 11 ITNDSSRKATFKKRKKGLLKKVSELSTLCDIKTCAIIYSPY 51
                                                          89*************************************85 PP
2K-box19.63.9e-081081592576
                                                 K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                                                           ++e e+ q   R l+Ge+L++L++ +L+ L   ++ks+k+i +k + ll +q
  augustus_masked-scaffold05990-abinit-gene-0.2-mRNA-1 108 NREKEMTQVMYRSLVGEGLQNLNIVDLNDLGWVIDKSIKEIDEKIKSLLEQQ 159
                                                           2333445566699******************************999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.885149IPR002100Transcription factor, MADS-box
CDDcd002664.07E-22285No hitNo description
SuperFamilySSF554553.01E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSSRKAT FKKRKKGLLK KVSELSTLCD IKTCAIIYSP YDTQPEVWPS  60
PMEVQNIIAK FKMMPEMDQS KKMVNQESFL RQRIAKSEEQ LKKQQRDNRE KEMTQVMYRS  120
LVGEGLQNLN IVDLNDLGWV IDKSIKEIDE KIKSLLEQQA VPPPPPPPPP AAAPAPQVVT  180
MTSHASRTTK QDMFNDEAAV RNTITDLATD SSQNQQWLMD LLKSNDNMCF GRNDDMLPYS  240
LHTNNFWSNF PFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927341.11e-154agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-61AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2N9I2A01e-112A0A2N9I2A0_FAGSY; Uncharacterized protein
STRINGXP_010058574.11e-84(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-59AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]