PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05485-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 319aa    MW: 36410.6 Da    PI: 5.824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05485-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171461148
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                          rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  augustus_masked-scaffold05485-abinit-gene-0.0-mRNA-1 14 RGLWSPEEDEKLIRYINTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                                                          788*******************************************97 PP
2Myb_DNA-binding53.26.7e-1767111147
                                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  augustus_masked-scaffold05485-abinit-gene-0.0-mRNA-1  67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                                                           89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.128961IPR017930Myb domain
SuperFamilySSF466892.02E-3011108IPR009057Homeodomain-like
SMARTSM007173.6E-131363IPR001005SANT/Myb domain
PfamPF002495.6E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-251568IPR009057Homeodomain-like
CDDcd001671.19E-111761No hitNo description
PROSITE profilePS5129425.71262116IPR017930Myb domain
SMARTSM007171.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567111IPR001005SANT/Myb domain
CDDcd001671.65E-1169112No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIN THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
TSPTTTTTST TEHSQMVYNA NQLDFMNHEL TPKPQVHETL FSSPCPLFMF DTSSLDGAQE  180
NNLRSDYFHD AMNLNTETWN VNQHHHQAQI HVQAQAQILA HPTAYTSGMD TNYLPPLIEN  240
MENMVPLEVQ SCSMDDEGEI GLNCLERQEL NEWVESQQQC SNFLFWDNVD DQGPLGGEEI  300
APASSNVGAN TLTAFPSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890158.10.0transcription factor MYB26-like
SwissprotQ8LPH61e-63MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2N9IS400.0A0A2N9IS40_FAGSY; Uncharacterized protein
STRINGcassava4.1_030636m1e-178(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-96myb domain protein 103