PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04468-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 392aa    MW: 43378.5 Da    PI: 7.0512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04468-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08141161526
                                                           --SGGGGTS--TTTTT-SS-SS CS
                                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                            C++f++ G Ck Gd C FaHg
  augustus_masked-scaffold04468-abinit-gene-0.6-mRNA-1 141 ACPDFRK-GNCKKGDACEFAHG 161
                                                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0888125IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6136162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751137163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5140163IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643171195IPR000571Zinc finger, CCCH-type
SMARTSM0035614171194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMLGEAHHPN PTVHVPPWPT QDDPTAEIYS PYSLTSLSVN SDGNGNTSTG DYSPYYLQDV  60
MTALQRYLPS NEADLDLDSD SGREVDAPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGNC KKGDACEFAH GVFECWLHPA RYRTQPCKDG  180
TSCRRRVCFF AHTPEQLRVL PPQQMQSPTP RSTVVNSVDS YDGSPLRHAI EAAKTLPFLS  240
SPSSISPPAT PPPADSPPMS PMAQSLSRSL GSGSINEVVA SLRNLQLGKV KSLPSSWNVP  300
GYGSPRGSML RPGFCSMPTT PTRAPARTGM GYFDVWDQGC EEETPMERVE SGRGLRAKMF  360
EKLREENSLD RVDPGPSTSS APDVGWVSEL VK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898530.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-141C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2N9IKS70.0A0A2N9IKS7_FAGSY; Uncharacterized protein
STRINGXP_008242454.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-128C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]