PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03794-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 341aa    MW: 37433.3 Da    PI: 6.6671
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03794-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17244277134
                                                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                                           C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  augustus_masked-scaffold03794-abinit-gene-0.0-mRNA-1 244 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 277
                                                           99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-802324IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-16238288IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53238274IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-15242275IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.65E-15242301No hitNo description
CDDcd002023.59E-14243290No hitNo description
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15244277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MIGPNFMDEI DCGSFFDQID DLLDFPADDV EAGQANEDCN SLIPNLWQTQ PESLPGSDSV  60
FSTNNSASDL SAELSVPYED IIQLEWLSNF VEDSFSGGSL TMKKEESFIN KDSSHQQFQT  120
SSPVSVLESS SSCSGEKNVP RSPETITPGR RGRARSKRPR PATFNPRLAM QLISPTSSIT  180
ETPQPFLAPK VTSDSESFAE SRLLIKIPKQ ANAEHKKKKK IKLTVPLGPV EANQNPPSQS  240
VRKCMHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF VPSLHSNSHK  300
KVIEMRNKSG EKVVIAGNMP TMAASPELIP NANSNIALEY M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897364.10.0GATA transcription factor 8-like
TrEMBLA0A2N9EQX60.0A0A2N9EQX6_FAGSY; GATA transcription factor
STRINGEMJ194281e-172(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-44GATA transcription factor 9