PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03244-abinit-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YC
Protein Properties Length: 143aa    MW: 16231.6 Da    PI: 7.0775
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03244-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC49.41e-154921198
                                                 NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69
                                                          e++t+  + elP+ r+kki+k d+d++++ +ea  l++ + elf+  l+ +s   + e 
  augustus_masked-scaffold03244-abinit-gene-0.3-mRNA-1  4 EESTEAIRPELPIGRVKKIMKLDNDINKVNSEALFLVTCSAELFLRFLAEKSAEITTER 62
                                                          5566777889************************************************* PP

                                                 NF-YC 70 krrtlkksdiaaavtrtd.ifdflvdivpr 98
                                                          kr+ +k   i  av++ + + dfl+d  p 
  augustus_masked-scaffold03244-abinit-gene-0.3-mRNA-1 63 KRKIVKLEHIRIAVKKHQpTSDFLLDSLPM 92
                                                          **************9865389*****9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.0E-211376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.19E-171488IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-191491IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAEEESTEAI RPELPIGRVK KIMKLDNDIN KVNSEALFLV TCSAELFLRF LAEKSAEITT  60
ERKRKIVKLE HIRIAVKKHQ PTSDFLLDSL PMPSSEPSDR PATDQKHPRP VSEKPVPAGT  120
RRIDHFFHKP ANEAPILIDN DES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899760.14e-93nuclear transcription factor Y subunit gamma
TrEMBLA0A2N9HE561e-79A0A2N9HE56_FAGSY; Uncharacterized protein
STRINGVIT_01s0010g03550.t013e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-52nuclear factor Y, subunit C13