PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold03244-abinit-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NF-YC | ||||||||
Protein Properties | Length: 143aa MW: 16231.6 Da PI: 7.0775 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 49.4 | 1e-15 | 4 | 92 | 11 | 98 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69 e++t+ + elP+ r+kki+k d+d++++ +ea l++ + elf+ l+ +s + e augustus_masked-scaffold03244-abinit-gene-0.3-mRNA-1 4 EESTEAIRPELPIGRVKKIMKLDNDINKVNSEALFLVTCSAELFLRFLAEKSAEITTER 62 5566777889************************************************* PP NF-YC 70 krrtlkksdiaaavtrtd.ifdflvdivpr 98 kr+ +k i av++ + + dfl+d p augustus_masked-scaffold03244-abinit-gene-0.3-mRNA-1 63 KRKIVKLEHIRIAVKKHQpTSDFLLDSLPM 92 **************9865389*****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 4.0E-21 | 13 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 4.19E-17 | 14 | 88 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-19 | 14 | 91 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MAEEESTEAI RPELPIGRVK KIMKLDNDIN KVNSEALFLV TCSAELFLRF LAEKSAEITT 60 ERKRKIVKLE HIRIAVKKHQ PTSDFLLDSL PMPSSEPSDR PATDQKHPRP VSEKPVPAGT 120 RRIDHFFHKP ANEAPILIDN DES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899760.1 | 4e-93 | nuclear transcription factor Y subunit gamma | ||||
TrEMBL | A0A2N9HE56 | 1e-79 | A0A2N9HE56_FAGSY; Uncharacterized protein | ||||
STRING | VIT_01s0010g03550.t01 | 3e-64 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-52 | nuclear factor Y, subunit C13 |