PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02688-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 541aa    MW: 59688.8 Da    PI: 8.718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02688-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015474496123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           ++Cp+C ++F++   L  H r+H
  augustus_masked-scaffold02688-abinit-gene-0.2-mRNA-1 474 HECPICFRVFRSGQALGGHKRSH 496
                                                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-5533IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-8731No hitNo description
SMARTSM003550.16931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658936IPR007087Zinc finger, C2H2
PfamPF139127.6E-5932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576679.1E-8103130No hitNo description
SMARTSM003550.13108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242108135IPR007087Zinc finger, C2H2
PfamPF139126.3E-8109132IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723390417IPR007087Zinc finger, C2H2
SMARTSM003550.58390412IPR015880Zinc finger, C2H2-like
PfamPF139120.0015390414IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037474496IPR007087Zinc finger, C2H2
SMARTSM003550.17474496IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-10474496IPR007087Zinc finger, C2H2
PROSITE patternPS000280476496IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEEDQQKKFV CKFCNRRFSC GKALGGHIRT HMNKNSAEEE DEVEVEADGN VNANNVVKFQ  60
SLNGGRRSKR DLSGFEADGL DSGYGLRENP RKTWRLVDSS SATLLQERVC KECGKRFQSL  120
KALCGHMACH SDKEKLISKF EDNSLMDSHS DTETSGPTQL RRSKRMRYKA VDAYPSGYTM  180
ANGSSSVSGN EQEQEEVAKC LMMLSRDSGL RNGLNSLAES SDNNSVVLEA KSCSIDVKMK  240
ITMKNSRDCA SNINEIVKLK KKIDKKLKTS EISLSDNSDS GYFRNGPKKA ESDVSVDGSY  300
WGDGFKKPKV YYGSGIGGFD SELGKSSSFE LRKELINDEG YGPVGTECDL RMKAKNDSFS  360
PEFSEGSSKK IKNDSSKVKG SKNAQKRGKY ECLNCNMSFH SHRALGGHRA SHTKSNGYCE  420
AIYESGENST GTGSLAVPKP QSKHVVSCSV KTSTSQSFSG HSKKRMGPRK SKGHECPICF  480
RVFRSGQALG GHKRSHFIGG SEERTLVLKQ ELPEFHGLID LNLPAPIDEE ANGDDAQFMP  540
W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878455.10.0uncharacterized protein LOC111990922
TrEMBLA0A2N9J5D80.0A0A2N9J5D8_FAGSY; Uncharacterized protein
STRINGEMJ288740.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-99C2H2-like zinc finger protein