PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02406-abinit-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 234aa    MW: 25873 Da    PI: 6.9615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02406-abinit-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-2181132155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           ++++GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  augustus_masked-scaffold02406-abinit-gene-0.9-mRNA-1  81 PHFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETPEDAALAYDKAAFKMRG 132
                                                           689*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-3081142No hitNo description
PfamPF008476.6E-1581132IPR001471AP2/ERF domain
SMARTSM003806.7E-4082146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3282141IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2382141IPR016177DNA-binding domain
PROSITE profilePS5103223.6782140IPR001471AP2/ERF domain
PRINTSPR003673.6E-138394IPR001471AP2/ERF domain
PRINTSPR003673.6E-13122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDSDFAALNS IQQYLLSDFE PPTTMMFSQS PSFADNVFLA ESWGYSVPSS NVVDPVKVEP  60
LEAASKEGVV AVAAARETHA PHFRGVRRRP WGKYAAEIRD PKKNGARVWL GTYETPEDAA  120
LAYDKAAFKM RGSKAKLNFP HLIGSSQVVE PVRVTHKRRS PELSSPSSDD GGSKNKRSRI  180
CWGASSVGQA DMPIIGEGSS DQANITWQSL VNNEPITWWR SLDYLSYDIP NSMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-3182147570ATERF1
3gcc_A3e-3182147570ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899791.11e-134ethylene-responsive transcription factor 1-like
RefseqXP_023927277.11e-134ethylene-responsive transcription factor 1-like
SwissprotQ8L9K12e-45ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2N9F6G11e-69A0A2N9F6G1_FAGSY; Uncharacterized protein
STRINGEMJ049495e-53(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-47ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]