PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02151-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26759.8 Da    PI: 8.0694
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02151-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.1e-29959151
                                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                          k+ien   rqvtfskRr g+lKKA+ELSvLCdaevaviifsstgklye+s+
  augustus_masked-scaffold02151-abinit-gene-0.3-mRNA-1  9 KKIENLNSRQVTFSKRRSGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSN 59
                                                          68***********************************************95 PP
2K-box46.51.6e-16871441572
                                                 K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                                                            + q +++ Lk+e+ +L+    ++lG+dLe+LslkeLq Le+q+ +++  +++kK++
  augustus_masked-scaffold02151-abinit-gene-0.3-mRNA-1  87 VEAQDDVNALKNELAKLRVAYLRMLGKDLEDLSLKELQILEDQMSEGILAVKDKKTK 143
                                                           567999*************************************************98 PP

                                                 K-box  72 l 72 
                                                            
  augustus_masked-scaffold02151-abinit-gene-0.3-mRNA-1 144 A 144
                                                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.772161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.07E-41269No hitNo description
SuperFamilySSF554555.62E-33285IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.19786191IPR002487Transcription factor, K-box
PfamPF014862.0E-1188185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRSGLLK KAKELSVLCD AEVAVIIFSS TGKLYEFSNT  60
SMEHTLSRYS RGLEMDYPQH SSDDLAVEAQ DDVNALKNEL AKLRVAYLRM LGKDLEDLSL  120
KELQILEDQM SEGILAVKDK KTKANAAVII KGFLFTEEVL LEQLKKSKIQ EQKALLENEA  180
LHKQLFLAFS DVSYQLSVQC FPIFLDMKLS TEVHRKRKSQ KIDHTCNDSG SQVASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21181178MEF2C
5f28_B3e-21181178MEF2C
5f28_C3e-21181178MEF2C
5f28_D3e-21181178MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903253.11e-124agamous-like MADS-box protein AGL18
SwissprotQ9M2K83e-54AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A2N9IFZ61e-102A0A2N9IFZ6_FAGSY; Uncharacterized protein
STRINGGLYMA02G33040.12e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-56AGAMOUS-like 18