PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 552aa    MW: 60158 Da    PI: 5.1789
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.82.3e-1281685381374
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar 55 
                                                           lv+ L++cA+ v+ gdl+la +l++ ++ l  + ++   + ++a yf  AL++ ++ 
  augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1 168 LVHMLMTCADSVQRGDLSLAGSLIEDMQSLlrRVNTTCGIGKVAGYFIDALSRCIFT 224
                                                           689*************************996555555799****************9 PP

                                                  GRAS  56 svselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                                                             ++    +  s++ + +  e+   ++ f+e++P+lkf+h+taNqaIlea++g++ v
  augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1 225 --PQANGLFGGSASGSASAFENELLYHHFYEACPYLKFAHFTANQAILEAFDGHDSV 279
                                                           ..66666666666666668888889999***************************** PP

                                                  GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                                                           H+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A
  augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1 280 HVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELA 336
                                                           ********************************************************* PP

                                                  GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                                           ++++v+f f+ ++a+rled+++++L+v+++Ea+aVn+++qlhrll ++ + + ++  
  augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1 337 RSVNVRFAFRGVAAQRLEDVKPWMLQVNSKEAVAVNSIMQLHRLLGSDPNRSPPIGI 393
                                                           **********************************************9999999**** PP

                                                  GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                           vL  +++l+Pk+++v+e+ea+hn++ F++rf+e+l+yys++fdslea    + + ++
  augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1 394 VLGWIRQLNPKIMTVIEHEANHNQPGFMDRFTESLYYYSTMFDSLEAC---TLQPEK 447
                                                           *********************************************988...467777 PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                            + + +++rei+nvv+ceg++r+erhe l+kWr+rl++aGF+p++l+++a kqa++l
  augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1 448 ALAEIYIQREICNVVSCEGSARVERHEPLAKWRSRLGQAGFRPLHLGSNAFKQASML 504
                                                           888888*************************************************** PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           l  ++ +gy vee++g+l+lgW++rpL+s+SaW+
  augustus_masked-scaffold01833-abinit-gene-0.1-mRNA-1 505 LTLFSAEGYCVEENEGCLTLGWHSRPLISASAWQ 538
                                                           *********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011298.1E-2029102No hitNo description
PfamPF120412.9E-302996IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098562.353142518IPR005202Transcription factor GRAS
PfamPF035147.9E-126168538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSPYDSATSA GSSSGSSSAS SSTKPADIDG LLAGAGYKVR SSDLRHVAQR LERLETAMVN  60
SPVELSQLAS SDTVLYNPSD IASWVDSLLS EFNHTPSLPS DLPDLPDVVV GPGINPTVIN  120
EADATWTDHD APQQQQQQQQ QQNVQSLTIP PNQLTVVTAM EEDSGIRLVH MLMTCADSVQ  180
RGDLSLAGSL IEDMQSLLRR VNTTCGIGKV AGYFIDALSR CIFTPQANGL FGGSASGSAS  240
AFENELLYHH FYEACPYLKF AHFTANQAIL EAFDGHDSVH VIDFNLMHGL QWPALIQALA  300
LRPGGPPLLR LTGIGPPSPD GRDSLREIGL RLAELARSVN VRFAFRGVAA QRLEDVKPWM  360
LQVNSKEAVA VNSIMQLHRL LGSDPNRSPP IGIVLGWIRQ LNPKIMTVIE HEANHNQPGF  420
MDRFTESLYY YSTMFDSLEA CTLQPEKALA EIYIQREICN VVSCEGSARV ERHEPLAKWR  480
SRLGQAGFRP LHLGSNAFKQ ASMLLTLFSA EGYCVEENEG CLTLGWHSRP LISASAWQAV  540
PDANSPLGIV TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-601515372378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841073.10.0PREDICTED: DELLA protein SLN1-like
SwissprotQ8S4W71e-163GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2N9G3E50.0A0A2N9G3E5_FAGSY; Uncharacterized protein
STRINGXP_002529354.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-137GRAS family protein