PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01570-abinit-gene-0.12-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27687.4 Da PI: 8.4904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.2e-20 | 22 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++ a+++++g+ augustus_masked-scaffold01570-abinit-gene-0.12-mRNA-1 22 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDTAAREFRGA 72 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-13 | 22 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-32 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.9E-38 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.854 | 22 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.35E-31 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 5.4E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAPRERAVKG NGNGNGIGKE VHFRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAR 60 AYDTAAREFR GAKAKTNFPF PIENANDVNN NKIDNNNNNN NNVNCHSNNQ SPSQSSTVES 120 PTRDPSALLV ESSPLDLNIA QSHAYGGAAA GFGSVPVRFP FQQQHHHSGF FAGGPPAAAN 180 HMIYFDTVVR AGMLPSHPYS QLNFDHFQPA ATFSGGVQSD SDSSSVVDLN HRDQKPQKLG 240 ILGLDLNQPP PPEFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-21 | 14 | 79 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB609974 | 0.0 | AB609974.1 Castanea crenata mRNA, microsatellite: PEA14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023929659.1 | 1e-117 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2N9EIY0 | 4e-98 | A0A2N9EIY0_FAGSY; Uncharacterized protein | ||||
STRING | EOY28180 | 2e-71 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-27 | erf domain protein 9 |