PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01478-abinit-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 273aa    MW: 29643.8 Da    PI: 4.4479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01478-abinit-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1865115155
                                                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                            ++y+GVr++  +g+WvAeIr+p  ng  k+ +lg+f ta +Aa a+++a+  ++g
  augustus_masked-scaffold01478-abinit-gene-0.11-mRNA-1  65 CRYRGVRQRT-WGKWVAEIREP--NG-GKKLWLGTFETAIDAASAYDKAASTMYG 115
                                                            78*****999.**********9..33.5**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.90E-3165124No hitNo description
PfamPF008472.0E-1265115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3166124IPR001471AP2/ERF domain
PROSITE profilePS5103221.50966123IPR001471AP2/ERF domain
SMARTSM003801.9E-3466129IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2166124IPR016177DNA-binding domain
PRINTSPR003672.9E-96778IPR001471AP2/ERF domain
PRINTSPR003672.9E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVMDNPDQKK RKRKNSRDSV AETLAKWEEK NTAQFATCGA PKVQAKGSKK GCCVKGKGGP  60
ENSLCRYRGV RQRTWGKWVA EIREPNGGKK LWLGTFETAI DAASAYDKAA STMYGSSARL  120
NFPDITSRTS PMESVKDCCW TSSESVPYSV GSPVGSESTT AANPSEFCAD EDALYYPVTE  180
ANMPSLVGTE AEGESTGVSE FCADEGTLYY PVTEAKDDST NYYGDNGQEN LLDCSENENL  240
MYEIMALLNN PVGNTDSVLG FGYDADQLGL GKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2067123360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1813KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916289.10.0dehydration-responsive element-binding protein 2A-like
RefseqXP_023916298.10.0dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1L6CAW93e-53A0A1L6CAW9_9ROSI; AP2/ERF domain-containing transcription factor (Fragment)
TrEMBLA0A1L6CB533e-53A0A1L6CB53_VERFO; AP2/ERF domain-containing transcription factor (Fragment)
STRINGcassava4.1_029110m5e-50(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-28ERF family protein