PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01148-abinit-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TCP | ||||||||
Protein Properties | Length: 213aa MW: 22667.6 Da PI: 8.6709 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118 | 1.2e-36 | 51 | 158 | 6 | 89 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaike 61 r+ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i++ augustus_masked-scaffold01148-abinit-gene-0.10-mRNA-1 51 PRTRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIA 106 699***************************************************** PP TCP 62 ltgtssssaseceaesssssasnsssg........................k 89 +tg+++ +a++++++s s+s++s + + augustus_masked-scaffold01148-abinit-gene-0.10-mRNA-1 107 ATGSGTVPATASSTSSPTLSSSAHSVPcriqplsavsgglgmfsmaqpqpsQ 158 ****999997776666666666556557777776677754443333332220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-31 | 53 | 154 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.249 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGSDMVLHFS EQDPTKQVPP TPSTTTTTAA AAAATAKTAT PKTQVSAHSL PRTRDRHTKV 60 NGRGRRVRMP ALCAARIFQL TRELGHRSDG ETIEWLLRQA EPSIIAATGS GTVPATASST 120 SSPTLSSSAH SVPCRIQPLS AVSGGLGMFS MAQPQPSQQP SCRLDLCQPM GMDYAAAAAA 180 SNGYRHMPFT ALLLQPTATE EAEEKQREEV LRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023900787.1 | 1e-109 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 1e-45 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A2I4EMD4 | 1e-85 | A0A2I4EMD4_JUGRE; transcription factor TCP11-like | ||||
STRING | XP_004156285.1 | 2e-71 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 3e-37 | TCP family protein |